Gqui030963.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010001169.1:121148-144534[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.8e-06 0.001 20.4 0.2 2 23 202 224 201 224 0.95 2 13 0.00062 0.071 14.6 1.4 1 23 256 279 256 279 0.93 3 13 6e-05 0.007 17.8 0.5 1 23 285 307 285 307 0.94 4 13 3.7e-05 0.0043 18.5 0.7 2 20 313 331 312 333 0.95 5 13 7.6e-06 0.00087 20.6 1.0 1 23 344 366 344 366 0.97 6 13 0.00047 0.054 15.0 1.0 1 23 376 398 376 398 0.97 7 13 5.7e-06 0.00066 21.0 0.3 1 23 404 426 404 426 0.98 8 13 1.1e-06 0.00012 23.3 0.5 1 23 432 454 432 454 0.99 9 13 2.6e-06 0.0003 22.1 3.9 1 23 460 482 460 482 0.96 10 13 8.5e-05 0.0098 17.3 2.0 1 23 488 511 488 511 0.96 11 13 0.00038 0.044 15.3 4.1 2 21 518 537 517 539 0.93 12 13 3.1e-05 0.0035 18.7 0.5 1 23 545 567 545 567 0.97 13 13 3.2e-05 0.0037 18.7 3.6 2 23 574 596 573 596 0.94
Sequence Information
- Coding Sequence
- ATGCCTCAGGCTCAGaaaatggATGACTCCGGCATTGATGCGCAAGTGAAAAGGGAAGCAACAGATGTCAAAACTGAAAGTATAGATGGTACTGAATTGGGAATTGATCAGGAAAATGAAGATTTGTCCGAAGAATCTGAAATTGCCGACGAGTCAGAGCCAGAAGTAGACACGGTTGTCCTTCAGAATATTCAGATTCAGCAGGGAGGTGGACAGTTTCCCCTAATCCTTAATGAATTTCCGGAAAACAACTCTGATGGAAATCTACGAATTAACACCATGGACGAAAATGTTATTCATACCTATATTATTGAtaataCGGAATATAATGCTGTCGAAGGACATGAGATAGTTTATGCAGAGATTGATGATGATGAAAACACTGTCCAATATGTAATCGAAGAAGGAACTGAATATGTAATGGGCGATGACTTCAATTCTGGAACGATAGAGTATACCTATCAAGATGAAGAAACGTTAATTGATGATCCTGAACATGGAGAGCAAGGGGAAGAACAAGAACAAACAGGGCAATTAGCTATACAGCCAACAGAGGAACAAGAAGATAAATCACAAGTAGCTCTTATCAAAGAGGAACATGTAGAATGTgacatttgtcaaaaaatgttcaaGACTACCGCAGCACTGAAAAGACACATCTCGGTGAACCACTGCTCCAAAAGTGAAACTGATGATGATCCTCTCACCTTACAGCTGTGCCCTTGCTGCGGGGAACCATCAGATTCTGCCCATACCaTTGGCGATTTCAGCTGCGAGCAATGTGGCAAACTTTTTGTCCAGATCAGCTGCCTCCAACGCCACTCGAGCATCGAACACCCCAAAGATAACGAATTTATTTGTATCGATTGCAAGAAAAAGTTCAACAGCAAAGAGGAACTGATTGAGCACATGAAAGTACACCCATTCAAAACCGTCAAGTGTCTGGATTGCAACAAGGAGTTTACCAGGAAGTATCATCTCGATAGGCATATTGGGCAGACGGGATGTATGGGACATCCAAGGAAAGTGTATGATTGTCGGgtctGCAAGAGATTTTTCACTCGCAAGGATAACCTAGCAGAACATTTGAGAGCTCATGCAGGTCAATCTAAAAAGAAGAAAacgtttttctgtgaattttgcGACAAAGAATTTCAAGGCTTCACTTTGTTGAATATCCACATTAGAACACATACAGgtGAAAAACCTTATCCTTGCGATTTGTGCCCTAAGAAATTTCCTTCCAGCGGAGCAATGAAAAAACATCGGCGCAtgcatacaggagaaaaaccatatgAGTGCGATAAGTGCGGCAAACAATTCGCCGCCAAGGAAACTCTCAACCGTCACTGGCGCACACACACTGGCGAAAAGCCGCACCAATGCAAGTTCTGCGGTAAATCATTCATCCAACCGTCTCAACTGCGTGCACACATTTTCCATCACACCGGCGAGAATGCTTACACTTGCCAATACTGCGGACGCGCCTTCAACCGCCGACTCAGGCTGACCACTCACATCAAGTTCATGCACGAGGGGGCGGAGCCTCTGCCGTGTTCGCACTGCGATAAGACCTTCTTCAGGAAGGAGGACGTCCAAAGACACATGTTGTGTCATAGCGGGGAGAGGCCTTTTATCTGCGATGTCTGCCAAAAGGGCTTCTCGGCAAAATCATCTTTGAAAATTCATAAGCTAACCCACCGCAAAGAGTCCCCTTGCAGCTGTGAGACGTGCGGCAGAGCCTTCATACGAAAAGACTGCCTTATGAGACACATCAGAGCCAGACACAGAGACGTCCTTGAAGACATAATGGCCAATGCGGAGAAGAAGCGCTTGCAGCAACAGCTGTTGGCTGCCGCCACTGATGCTGCCGCGCTGAGTAGTGTCACGGGTAGTGTCATTTGGAACGAACTGACTCTTACAGAGTCTATTAAAGAACTGCTGACGTTGCTGGTTGACGAAGAGTGTCTAGAGGAGTTCGGTTATCCCGAATCGCCTGTGGATAGAGTGTTGGACTGTGTCATCCGCAGGTGCGGATATAAGCCCGCATCAGAAGACGACTTCGACTATCTCGGTAGAATCAGGGAAAACGCCAAATTGTTGTTCACTGTTGTCATTGATGACGAGGCTGTCAAGGAGCTCTTGAACAACCAGACAGTCGACGAGGTCATCTTGCACGTTCTCAGGTTGGCTAAGAAGCAGGGGACATGA
- Protein Sequence
- MPQAQKMDDSGIDAQVKREATDVKTESIDGTELGIDQENEDLSEESEIADESEPEVDTVVLQNIQIQQGGGQFPLILNEFPENNSDGNLRINTMDENVIHTYIIDNTEYNAVEGHEIVYAEIDDDENTVQYVIEEGTEYVMGDDFNSGTIEYTYQDEETLIDDPEHGEQGEEQEQTGQLAIQPTEEQEDKSQVALIKEEHVECDICQKMFKTTAALKRHISVNHCSKSETDDDPLTLQLCPCCGEPSDSAHTIGDFSCEQCGKLFVQISCLQRHSSIEHPKDNEFICIDCKKKFNSKEELIEHMKVHPFKTVKCLDCNKEFTRKYHLDRHIGQTGCMGHPRKVYDCRVCKRFFTRKDNLAEHLRAHAGQSKKKKTFFCEFCDKEFQGFTLLNIHIRTHTGEKPYPCDLCPKKFPSSGAMKKHRRMHTGEKPYECDKCGKQFAAKETLNRHWRTHTGEKPHQCKFCGKSFIQPSQLRAHIFHHTGENAYTCQYCGRAFNRRLRLTTHIKFMHEGAEPLPCSHCDKTFFRKEDVQRHMLCHSGERPFICDVCQKGFSAKSSLKIHKLTHRKESPCSCETCGRAFIRKDCLMRHIRARHRDVLEDIMANAEKKRLQQQLLAAATDAAALSSVTGSVIWNELTLTESIKELLTLLVDEECLEEFGYPESPVDRVLDCVIRRCGYKPASEDDFDYLGRIRENAKLLFTVVIDDEAVKELLNNQTVDEVILHVLRLAKKQGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329860;
- 90% Identity
- -
- 80% Identity
- -