Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010000992.1:337872-358998[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00086 0.099 14.2 5.8 3 23 153 173 151 173 0.96

2 14 7.2e-05 0.0083 17.6 1.9 1 23 179 201 179 201 0.98

3 14 1.4e-05 0.0017 19.8 3.9 1 23 207 229 207 229 0.98

4 14 3.5e-08 4.1e-06 28.0 1.7 1 23 235 257 235 257 0.99

5 14 4.1e-05 0.0047 18.4 0.8 1 23 262 284 262 284 0.98

6 14 3.7e-05 0.0042 18.5 0.5 1 23 290 312 290 312 0.98

7 14 2.8e-05 0.0032 18.9 2.4 1 23 318 340 318 340 0.98

8 14 3.8e-05 0.0044 18.5 4.3 1 23 346 368 346 368 0.98

9 14 3.4e-05 0.0039 18.6 4.7 1 23 374 396 374 396 0.99

10 14 9.2e-06 0.0011 20.4 0.4 1 23 402 424 402 424 0.96

11 14 2.2e-06 0.00026 22.3 0.6 3 23 433 453 431 453 0.96

12 14 0.00011 0.013 17.0 2.7 1 23 459 482 459 482 0.95

13 14 0.014 1.6 10.4 2.0 1 23 488 510 488 510 0.95

14 14 1.8e-05 0.002 19.5 2.2 1 23 516 538 516 538 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00086	0.099	14.2	5.8	3	23	153	173	151	173	0.96
2	14	7.2e-05	0.0083	17.6	1.9	1	23	179	201	179	201	0.98
3	14	1.4e-05	0.0017	19.8	3.9	1	23	207	229	207	229	0.98
4	14	3.5e-08	4.1e-06	28.0	1.7	1	23	235	257	235	257	0.99
5	14	4.1e-05	0.0047	18.4	0.8	1	23	262	284	262	284	0.98
6	14	3.7e-05	0.0042	18.5	0.5	1	23	290	312	290	312	0.98
7	14	2.8e-05	0.0032	18.9	2.4	1	23	318	340	318	340	0.98
8	14	3.8e-05	0.0044	18.5	4.3	1	23	346	368	346	368	0.98
9	14	3.4e-05	0.0039	18.6	4.7	1	23	374	396	374	396	0.99
10	14	9.2e-06	0.0011	20.4	0.4	1	23	402	424	402	424	0.96
11	14	2.2e-06	0.00026	22.3	0.6	3	23	433	453	431	453	0.96
12	14	0.00011	0.013	17.0	2.7	1	23	459	482	459	482	0.95
13	14	0.014	1.6	10.4	2.0	1	23	488	510	488	510	0.95
14	14	1.8e-05	0.002	19.5	2.2	1	23	516	538	516	538	0.98

Sequence Information

Coding Sequence: ATGGAAGTTGCTGAAGATGGGATGAGGCGTGTTAAAGAGCATAATTATGTCTTTTATGATATCTTAAAGGAAGAAATGGTAAAGGAAGAGCCTTTTGAAATTGAACCATTCAGTAAATACGTTGAGAACTGCTCCGAGCAAATTCAAGATTTATGGGAAATTGATGATGAATTGAGAGCAGAAGTGGACCAGATTGATAATGGGGTTGTATTGAAAAATGCAAATGAAGAGAACTTTGAATGTGATGATGATTCTTCAACAAATAACGCTGGATTGAAAACTGAGATATCTAATACTGAGAATGAAATTGATTATACATATAGAGGAATCAAAATTGAACCAAGCTCCTCTCCTGAATTCTCAACAGattatgGAGTAGAACACCAACATAATGCCACAGAGGAAGGGCAAAAAACGAAAGTGAAAAATGATTCCAAGAAGAAGAAACgtatttgttgcaaattctgtacagagtgtttcaacaaaaaaatcgaattagaGCAACATATGAGAAGTCATACAGGAGAAGAACCATTCAAGTGTGAATTCTGTTCAAAAACTTTCAGACTAAAACCTAGTTTGAAGCTGCATGAAAGAATTCATACGGGGGAAAAACTTTTTCAGTGTAATTTCTGTTCAAAGTGTTTTACAGTAAAATCTAATTTGTTGATCCATGAAAGACTTCACACAGGGGAAAAACCGTTCAAGTGTGAGATATGTCCAAAATCTTTTGCTCGCAGAGATCATTTGTTGAACCATCAACGCATTCATACAAAAGGACAATTTCAGTGTAACTtatgttcaaaaatttttatagaTAAATTTGAATTGTTCTTGCACGAAAGAATTCACACAGGGGAAAAAGTTTTTCAGTGTAATGTCTGTTCAAAGAATTTTGCAAAGAAATCTGTTTTGATGATTCACGAAAGAATTCATACGGGAGTAAAACCATTTAAGTGTGAGTTATGCTCAAGATCTTTTACGCGAAAAGGTTGTTTGTTGGAACACCAAATTATTCATACAGgagtaaaattatttcattgtaaGTTTTGTTCAAAGTCTTTCAGTCGAACAAGTGGTTTGTTGAGgcatgaaagaattcatacaggggaaaaaccatttaaaTGTAAGTTCTGTACAAAGACTTTTTCTCAAAAACCCCATTTGTTAGggcatgagagaactcatacaggggaaaaaccatttcccTGTAAATTCTGTTCGAAATCTTTTGCTCGTAACAGTCAATTATTAGTTCacgagataattcatacaggAAAAAAAACACCAATTATATGCGGAGTTTGTTCCAAACCTTTCTCTTATAAAAGTAGTTTGAAGACTCATTTGAAAACTCACACAGGGGAAAGACCATTCAAGTGTAGCATTTGTTCAAAATGTTTTACTCTCAAAAATGGTTTATTGAAACACCAAGCACAGGTACATTCGGAGGAAAAACCATTCCGGTGTAACTTATGTTCAAAgagtttcaaaataaaaactatattgtTGAAACACGAAAAACTTCACACAGGAGAAAAATCATTCAAGTGTAGCTTTTGTTCTAAATCATTTGCTCGTAGAGATTATCTATCGGGTCATCAAAAGATTCATACAGCGGAAAAACTATGA
Protein Sequence: MEVAEDGMRRVKEHNYVFYDILKEEMVKEEPFEIEPFSKYVENCSEQIQDLWEIDDELRAEVDQIDNGVVLKNANEENFECDDDSSTNNAGLKTEISNTENEIDYTYRGIKIEPSSSPEFSTDYGVEHQHNATEEGQKTKVKNDSKKKKRICCKFCTECFNKKIELEQHMRSHTGEEPFKCEFCSKTFRLKPSLKLHERIHTGEKLFQCNFCSKCFTVKSNLLIHERLHTGEKPFKCEICPKSFARRDHLLNHQRIHTKGQFQCNLCSKIFIDKFELFLHERIHTGEKVFQCNVCSKNFAKKSVLMIHERIHTGVKPFKCELCSRSFTRKGCLLEHQIIHTGVKLFHCKFCSKSFSRTSGLLRHERIHTGEKPFKCKFCTKTFSQKPHLLGHERTHTGEKPFPCKFCSKSFARNSQLLVHEIIHTGKKTPIICGVCSKPFSYKSSLKTHLKTHTGERPFKCSICSKCFTLKNGLLKHQAQVHSEEKPFRCNLCSKSFKIKTILLKHEKLHTGEKSFKCSFCSKSFARRDYLSGHQKIHTAEKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -