Gqui012744.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000014.1:1593593-1641451[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.08 9.2 8.0 1.8 2 23 156 177 155 177 0.96 2 16 2.1e-05 0.0024 19.3 4.5 1 23 182 204 182 204 0.98 3 16 0.00093 0.11 14.1 4.1 1 23 210 232 210 232 0.97 4 16 0.01 1.2 10.8 2.2 1 19 238 256 238 257 0.96 5 16 2.5e-06 0.00028 22.2 0.2 1 23 266 288 266 288 0.98 6 16 0.0011 0.12 13.9 0.3 1 23 533 556 533 556 0.97 7 16 4e-05 0.0046 18.4 4.3 1 23 562 584 562 584 0.97 8 16 3.2e-06 0.00037 21.8 5.0 1 23 590 612 590 612 0.98 9 16 3.6e-06 0.00042 21.7 0.9 1 23 618 641 618 641 0.96 10 16 0.0077 0.89 11.2 2.8 1 23 655 677 655 677 0.87 11 16 0.00066 0.076 14.5 3.0 3 23 685 705 683 705 0.97 12 16 2.3e-06 0.00027 22.3 0.5 1 23 712 734 712 734 0.96 13 16 3e-06 0.00035 21.9 1.2 1 23 740 762 740 762 0.98 14 16 4.4e-07 5.1e-05 24.5 0.9 3 23 770 790 768 790 0.96 15 16 2.2e-05 0.0025 19.2 0.1 1 23 796 818 796 818 0.99 16 16 0.06 7 8.4 0.7 1 23 823 846 823 846 0.97
Sequence Information
- Coding Sequence
- ATGGAAATTGAAAGCTTCAACATCAACCAGATTTGTAGGACATGCAAATGTATCGCGCCCCACATGCGGTCCCTGTTCGAGGGATTCGAAAATCCCCATCAAAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCGGTTCAGGTAATGTGTGGAGACGGTTTGCCGACAATGATATGCCAAATATGTGTCGAACAACTGAAAAATGCATTCATCTTCAAGAGACAATCCGAAAAAGTAGATGTAGCTCTGAGGGAATACGCGAAAAGTATCAAAGTGAACGAAATCAAACAAGAACTCCAAAACTCGGAGTTCATGGAATCATTGAACACTCTGAATAACCTTCTTAATGAGCAATCAACATCAAAAGAGGATTCAATACAAGATGGGCAACCGATTCCTGTTGCTCCCAAAATCGAGACGGACTATATCCAATTCATGGATAACAACCAGATGTTGCTCACTTGTCGTGAATGCGCTAAAATATTCACTACCTTGGAGGGCTTGCGTTGTCACAAACGCATCCACACCGGCAGCATGTACAAGTGCAAGCAATGCGACAAGGAGTATACCAGGTTGAATCACCTTCAACGCCATGAGCAATCTCACAACAGGAGGAAGGTACACGTCTGTCGTATCTGTAGCAAGACCTTGACAAGGATGGAGCACCTGAAGAGACATCTCGTCACTCACTTAAGGGAGAAGCCCTTCTCTTGCAAGACGTGCAACAGGGGATTCAATCGGGTGGAGCATTTGCATAATCACGCTCCGAGATGCAAAGGTGACACTGTATATCCTTGCGACATCTGTAACAAGGCTTTCAATCGAGAAGACAGCCTTGAGGTACACAAGAAGATGCACGACAACCAGACCCCGAAGCTGCCTACTATTGAAAATCTCGACAATATCGAGGACCACTATTATCAGATTGATCAGGACATAAATGTCACTTTTTCTGATCATGAAGACGATGATGTGGATGATTGTTTTGAACCTCACGTCGAGATGACAGAAGAGGAAGAGAAAATAAGGGTAAATGAAATGACCATGGTAGAGGAGGAAAGCAACGCGAGCGATGGATCGGTAGGAGGCGGGGACATCGATAATGACCCTGAAGACATAGATGGCGAAGAGGAAAATGAACTCGCCGAAGATGGCAACGAAATAGCGGGAGGGATCATCGAGGATGATGACAAGAATTTGAGTGACTTGAACGAGACTCTGCTCAGCGAGGAGGGTGAAGTCGATAAGAAGGAAGTCAAAGTCGAGGAAAGTATAGAGCAGCTCGAATCGGGTCAAGAAGAGATGGATGAGCTGTTGAGAGCGACTATTGCCGAGGTTGAAGAAGCTGATGGTGAGGAAGACGAGTCGGACAAAGACAGTGAAGATTCCGATTATACTCCCAAGAAAACGTCCCCCAAGATGAAACGAGGCAGAGGGAGACCTCGGAAAAACCCGGAGTCGCCGCCCCGTAAAACTCGAAAGATGAAGACTCAAAAATCGCCCAAGGTTCCTGGCAGAGGTAGGGGTAGGCCGCCTTCCAAGGTGAAAGTCAAGAAAGAGAAGGAAGTGGAAGACGATGACTATGGAGATTATCCGTGTCCGATTTGCCAAGAGATGTTCCACACTCTGATGAAGTTGGATAAGCACGCTAGAATTGCGCACGAAGGTGAGAAGATTCACAAATGCAACGTATGCCAGAAAGAATTTGCCAGGGCGAACCACTTGAAGAGACACGTCACATCTCACTCGAACATTAAACCGTTCCGTTGTAACGTGTGCACAAAGAGTTTCAACCGCAGGGACCACCTCAATCAGCACCAGAAACTGCACGAGCGACAGAACGATTACGAGTGCGACATCTGTCAAAAGCCGTTCAATAGGGCGGATCATCTAGCCAAACACAGGGCCTCCAAGCACGGCATAGGAGAAAAGATATGCgtGATGGGCGAAAAAAGATACGAATGTCCTTTGTGTCACAAATGTTTCACCACAGAAAAATACAGGGATGTCCATGTGGCTGGCCACAATGGCCAAAAGGAGTATGGGTGCAAGGTGTGTGAGAAGACTTTCCTGTCCAAATCGCATTTGACGGAGCATATGAAATTCCACAACGAACATTCCAAGAAATTCCTTTGTTCCGAGTGTGGACAGAGGTTCATTCGAAATGATTATCTGGTTATACATATGAGGAGGCATCGTGGTGAAAAGCCATTCAAATGCAAATATTGCGGTAAAGGTTTCCCGAGGACCACAGATTTGACCGTTCATGAGAGATACCATACTGGAGAAAAAACTCATTTATGTACCATATGCGGCAGAGGCTTTGGAAGgGCATACAACTTGACAGTCCATATGAGAACTCATACCGGCGAAAAACCATATCAGTGCACTTATTGTGACGCAGCTTTCGCCCAGGGCAACGATTTGAAAGCCCACGTCAGGCGACATACCGGTGAAAGGTTCCAATGCGAGTTATGCACAGAAAGTTTCCTCATGGGTTATCTGTTGACCCAACACAAGAGGACGGTCCACGgtTTGAACGTTGTTAGCAACATAAGACGCCTGCAACCGGTTCACAAGACGGAAAATCCCGACGAACCGCCGCCGATCACCATACCGTTACCCAAACCAGTAATTCCGGACACACTTGTGTTCAACGCCTTACACGCAAACTCCCTGCACCCCAACACCTTACACGCTAATGTACTCCATGCGCAGTTGGCCGTTGCGCAGCTACATTTACCTAGGGAATAA
- Protein Sequence
- MEIESFNINQICRTCKCIAPHMRSLFEGFENPHQSPRIDEMLMACASVQVMCGDGLPTMICQICVEQLKNAFIFKRQSEKVDVALREYAKSIKVNEIKQELQNSEFMESLNTLNNLLNEQSTSKEDSIQDGQPIPVAPKIETDYIQFMDNNQMLLTCRECAKIFTTLEGLRCHKRIHTGSMYKCKQCDKEYTRLNHLQRHEQSHNRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRVEHLHNHAPRCKGDTVYPCDICNKAFNREDSLEVHKKMHDNQTPKLPTIENLDNIEDHYYQIDQDINVTFSDHEDDDVDDCFEPHVEMTEEEEKIRVNEMTMVEEESNASDGSVGGGDIDNDPEDIDGEEENELAEDGNEIAGGIIEDDDKNLSDLNETLLSEEGEVDKKEVKVEESIEQLESGQEEMDELLRATIAEVEEADGEEDESDKDSEDSDYTPKKTSPKMKRGRGRPRKNPESPPRKTRKMKTQKSPKVPGRGRGRPPSKVKVKKEKEVEDDDYGDYPCPICQEMFHTLMKLDKHARIAHEGEKIHKCNVCQKEFARANHLKRHVTSHSNIKPFRCNVCTKSFNRRDHLNQHQKLHERQNDYECDICQKPFNRADHLAKHRASKHGIGEKICVMGEKRYECPLCHKCFTTEKYRDVHVAGHNGQKEYGCKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKTENPDEPPPITIPLPKPVIPDTLVFNALHANSLHPNTLHANVLHAQLAVAQLHLPRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329861;
- 90% Identity
- -
- 80% Identity
- -