Gqui015795.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000312.1:428235-449155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.6e-05 0.0041 18.5 0.4 3 23 38 58 37 58 0.96 2 19 0.00014 0.016 16.7 0.5 1 23 64 87 64 87 0.96 3 19 0.02 2.3 9.9 0.2 1 23 114 136 114 136 0.95 4 19 2.2e-05 0.0025 19.2 1.4 2 23 143 164 142 164 0.97 5 19 0.00021 0.024 16.1 0.1 1 23 170 193 170 193 0.92 6 19 5.5e-06 0.00064 21.1 1.9 1 23 199 221 199 221 0.98 7 19 0.00056 0.065 14.8 0.9 2 23 297 318 296 318 0.91 8 19 0.097 11 7.7 0.7 1 23 356 378 356 378 0.97 9 19 0.00085 0.098 14.2 3.8 1 23 384 406 384 406 0.97 10 19 0.00018 0.021 16.3 0.3 1 21 412 432 412 435 0.90 11 19 1.3e-07 1.5e-05 26.2 3.0 1 23 441 463 441 463 0.99 12 19 0.00056 0.065 14.8 0.9 2 23 486 507 485 507 0.91 13 19 9.9e-05 0.011 17.1 0.4 2 23 547 568 546 568 0.94 14 19 0.039 4.5 9.0 1.2 1 23 600 622 600 622 0.98 15 19 0.0023 0.26 12.9 2.7 1 23 628 650 628 650 0.98 16 19 0.0017 0.2 13.2 0.4 1 20 655 674 655 676 0.94 17 19 0.076 8.7 8.1 0.2 3 19 677 693 675 697 0.93 18 19 5.1e-05 0.0058 18.1 0.7 1 20 703 722 703 724 0.94 19 19 0.00076 0.087 14.4 2.2 2 23 730 751 729 751 0.97
Sequence Information
- Coding Sequence
- ATGCCTACCACTCCCCTCTTAATAGAATCAAAATATCTTTCAACAGGTTTTCCCGAAGAAGGCTTCAAGAATACCCACCTACGTGATCATTTTAGGAATGGCCCGGCTCCTTGTACGATATGTGGCAAATACTTCAAGAAAAAAAGTAATTACTTGGAGCATTATGCAATCCATTTCGATCATATCAAGTTCACTTGCACGGTATGTTCTGAAATCTTTTCGTCAGGGAGGAACCTTCGAAGGCATCGAGCGTCTATTCACAAGTCGTTATGTATTAAGAAGAAGCCTGTTATCATTCCTGCTACCACTCCCCAAGACGAGAATATACAGGGAAAACTTTTTAATTGTCGTTTTTGCCCGGAAAAGTTTCCCAACAAATCGGTCTTGATCGGCCACGAAAGTATTCACACAGGAAAGAAGGTCCTCCAATGCTCGGTCTGTTCAAGAAATTTTTCCAAGTTGACCGAACTGGACAAGCACATGAGAACCCACACCGGCTCTAAACCTTTCGAATGTCCGGTGTGCTTGAAAAAATTCGTCCAAAAGGCAGCCCTGAACGTTCACCATGCTGCCGTCCACTCTAAGGCGAAAATATTTCAGTGTTCATTGTGTCCGCAAACCTTTGCTTACAGTTCTAGCTACCGGAGGCACCTACGGAATCATAAAGGCGAAACATCATTCGAATGCCAAgttatttcaattttaatcttCTGGCAAAAAAATGCTGTGTGGAACACGGATGATGTGCACTCATATGACACCAAACATAAAGGTAACCTGGCTGAGAGACTTGAGGTGTCTAAAAGGCTGCCGATGGTTATTGGAAGTTATCTCGAGGAAGCCATTAAAAATGTACATGTATGTGTTCATTTTGGAAGAGGTACCGTTCCCTGTAAAGTTTGCGGCAAACAGTTCAAGAGCAAACAGCTATATTTGAAACATTATGGATTCCATgccaaaaaagaaaataaagttaccagtatctttgaaaaatatcacaaaaaccCAGGTACCAAGTCAACTTCTGGTGAAGATCTTTCTTCCACGtcatatgataataaaaaatatcagtgTCGTTTTTGTTTGGAGGAATTTTTCAACAGATCGGATTTTATTGGCCATGAAAGTGTTCACACCGGAAAAAAAGTACACCACTGCTCGATTTGTTTGAAGAATTTTGGTTCGCAAACCGAATTGAGCAAACACTTGAGAATTCACACCGGCTCTAAACCGTTCGAATGTCCAGTGTGCAGGAAAACATTCGCACAGAAGGGAGCCATGAAGGTTCACCATGTTGCCGTGCACTTGAAGGCAAAATCCTTCCAGTGTACACAGTGTCCTCAAACATTCTCTTACAGTTCAAATTTCCGGAAACATATGAGGATTCATAGAGGTTTTCTCGAGGAAGCCGTCAAAAACGTGCATGCATGTGTTCATTTTGGAAACGGTCCCGTTCCCTGTAAAGTTTGCGGCAAACAGTTCAAGAGCAAACAGCTTTATTTGAAACATTATGGATTCCATACCGAAGAAGAAAATCAATTAACCAGTAACTCTGAAAAACATCACAAAAACCCAGattttctcGAGGAAGCCGTCAAAAACTTGCATGCATCTGTTCATTTTGGAAAAGGTTCCGTTCCCTGTAAAGTTTGCGGCAAACAGTTCAAGAGCAAAAAGGCGTATTTGAAACATTATGGAATCCACACGGAAGCGGAAAATCGATCAACCAATAACCTTGAGAAACACGACGAAGATCCTGCTTCCACGCCCGGTGATAACGAACTGACCCAGGAGAAATATCAGTGTCTTTTTTGTCCGAAGAAATTTTTGAACAGATTCTCTTGGCTCGGCCACCAAAGAATTCACAACGGAAATAAAGTACACCAGTGCTCGGTTTGTTTGAAGAATTGTGCTACGTTGGGTTTATTGAACAAACACTTGAAAATTCACGACTCTGAATCTTTCGAATGTCCAGTGTGCTCGAAAAAATTCGTCCAAAAGGGAGCCATGCACGTCCACCATGTTGCCtgcaagGTATGCTCGAAAGGATTCGTACTCAGTTCAGCCATGAGGAATCACGAAATTTGTCATAAGGAGACTGCATCCTTCCAGTGTTCAATCTGCTCCAAACCCTTCAAATACATGTACAACTTGAAAAAACATGAGTCGATCCAAAGCAAAACTCTCCGATGCGAGATCTGCCACAGGACTTTTTTGAAGAAAGAAACTTTAGCTCGACATTTGCTAACGCATTCGAAACCGACAATCATCGCGTGA
- Protein Sequence
- MPTTPLLIESKYLSTGFPEEGFKNTHLRDHFRNGPAPCTICGKYFKKKSNYLEHYAIHFDHIKFTCTVCSEIFSSGRNLRRHRASIHKSLCIKKKPVIIPATTPQDENIQGKLFNCRFCPEKFPNKSVLIGHESIHTGKKVLQCSVCSRNFSKLTELDKHMRTHTGSKPFECPVCLKKFVQKAALNVHHAAVHSKAKIFQCSLCPQTFAYSSSYRRHLRNHKGETSFECQVISILIFWQKNAVWNTDDVHSYDTKHKGNLAERLEVSKRLPMVIGSYLEEAIKNVHVCVHFGRGTVPCKVCGKQFKSKQLYLKHYGFHAKKENKVTSIFEKYHKNPGTKSTSGEDLSSTSYDNKKYQCRFCLEEFFNRSDFIGHESVHTGKKVHHCSICLKNFGSQTELSKHLRIHTGSKPFECPVCRKTFAQKGAMKVHHVAVHLKAKSFQCTQCPQTFSYSSNFRKHMRIHRGFLEEAVKNVHACVHFGNGPVPCKVCGKQFKSKQLYLKHYGFHTEEENQLTSNSEKHHKNPDFLEEAVKNLHASVHFGKGSVPCKVCGKQFKSKKAYLKHYGIHTEAENRSTNNLEKHDEDPASTPGDNELTQEKYQCLFCPKKFLNRFSWLGHQRIHNGNKVHQCSVCLKNCATLGLLNKHLKIHDSESFECPVCSKKFVQKGAMHVHHVACKVCSKGFVLSSAMRNHEICHKETASFQCSICSKPFKYMYNLKKHESIQSKTLRCEICHRTFLKKETLARHLLTHSKPTIIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -