Gqui005031.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000317.1:71939-113372[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0022 0.25 12.9 3.9 1 23 278 301 278 301 0.96 2 21 0.38 44 5.9 0.3 2 23 318 339 317 339 0.89 3 21 0.0028 0.32 12.6 0.1 3 23 347 367 346 367 0.97 4 21 0.051 5.8 8.6 2.2 1 23 433 455 433 455 0.98 5 21 0.0053 0.61 11.7 4.6 1 23 460 482 460 482 0.98 6 21 0.0064 0.74 11.4 8.0 1 23 488 510 488 510 0.95 7 21 4.4e-06 0.0005 21.4 1.7 1 23 516 538 516 538 0.98 8 21 1.8e-05 0.0021 19.5 0.3 1 23 544 567 544 567 0.97 9 21 6.6e-08 7.6e-06 27.1 2.4 1 23 601 623 601 623 0.98 10 21 0.15 17 7.1 0.6 3 23 632 651 631 651 0.97 11 21 1.7e-05 0.0019 19.6 0.8 1 23 658 680 658 680 0.97 12 21 0.0012 0.13 13.8 7.5 1 21 686 706 686 708 0.96 13 21 2.9e-05 0.0033 18.8 1.8 1 23 715 738 715 738 0.97 14 21 0.15 17 7.1 4.4 1 23 744 766 744 766 0.98 15 21 4.5e-06 0.00052 21.4 3.1 1 23 772 794 772 794 0.98 16 21 1.4e-05 0.0016 19.8 3.3 1 23 800 822 800 822 0.98 17 21 2.1e-05 0.0024 19.3 5.0 1 23 828 850 828 850 0.99 18 21 1.7e-05 0.002 19.5 0.9 1 23 856 878 856 878 0.98 19 21 0.00036 0.041 15.4 4.6 1 23 884 906 884 906 0.99 20 21 0.0038 0.43 12.2 4.4 1 23 912 935 912 935 0.97 21 21 6.8e-05 0.0079 17.6 0.8 1 23 940 964 940 964 0.92
Sequence Information
- Coding Sequence
- ATGAATAACTGGAATTCAATAACAATAAACATGAAAGGAGACTTGTTGCTTGAAGATTTTTCTCTCATTTGTAGAATCTGCTTAACTAGAAACGATTTGAAACCTTTTGTCGAAGAGAAATCTCTACAAAAACGTTTTATGGACATAACTGATATTCAGGTGGAAACCCAAGATAGTCTTCCAAAAAATGTGTGTGGGAACTGTTTGAGCACACTCGAAGATATATCactattcattgatttatctaaGTATAATAACATAGGCTTCCTTCAAGATTTGATTAACGAAAAAGAAAAACTGTATATATGCCAAAAAGATGAAATAACAATCATAGATGATGGTATGACAATTAAAATTGAACAAGACTATGGTGATAATGATGTCACAGATTACCATAGTACtggaaaacaaatgaataaacaaatatatgaagtgaaaaatggaaagaaatctGATGAGAGAACAAACACAAATTCTTTTCTACTTGTTTGTCGAATATGCTTGGCGAAAGAAAATCTGAGGGTTTTCGATGGAGAAGAACATCTGATAAATGTATTCAGGAATATTACTAATATAGTGGTTACAACTCAGGATGAACTTCCAAAAAATATCTGCTCCAGATGTATTGACAAGCTTCAAGGTATTTCATCCTTCATCGAATTGTCAAAGTCCAACAATACAAAACTCCATCAGGTTTTCTCAACCCAACAAGATGATATTTCTCTAGAAAAATCAGTTGTGACTACAGTAGtccatgaaataaaaaaagaagatcAATTCAGGGGACGAGGGTCTCCTGAATTGAAATTTTCCAGCAATTTCGATCAATCTCACACTTGTGGAAAATGTGGCGATACCTTCAGTACCAAAAGAGGTTTGATGAATCATCAAAAACATGTACATACTTCTGATGGGAgacatataaaaaataatgatgtCCTGGCTCTGTGGAAATGTGGGTTGTGTAATAAAGatttCCCTACATCACTATCAGAGGACAAACACATGGAGTCCCATTTTGGAAATGATTTTCTACTCTGTTTCATTTGTGGAAGAGCATTCATCAAAAGAGAAGAGTTTCTATTGCACATCACAGTACACTcagtcaaagaaaaaaaatattccgacAAATCATCCGGAAATAACAGGAATAATAAATCTAAagaaatccagaaaaatatttctgatggaatattaaataataaatcaCATTTATGTGATGAAAAAGAATCAGCAAAAAAGAAAAAACCGCGAAAGATTTTGGCAATTGCGATTAGAGGATTACGTCAAAGATCATTTCAATGTAAAGTATGTCTAAAAGATTACTTGAAGGAAATTCATTTGACACAACATATGAAGGTTCATTCAGAACCCTCATTCCATTGTGAAGTTTGTTTGGGAAAATTCACATACAAACATAATTTACTAACACACATGAAGGTTCATTCGGACGAACGTCCATTCTGCTGTAAAATCTGTAGCAAATCTTTCAAATTCAGGCATACCTTGGTAAAACATTTGTTCCTGCATACAGGCAAGAAACCATTTGAATGTCACAATTGTCAGAAACAGTTTGCTGAGAAGAGAAACTTGGCAGTTCATATGAGAATACATACTGGTGAGCGCCCTTATAAGTGTTCGATATGCTTAAAAGCATTCACTCAAAAAGGAGATGTGAAGAAACACATTGACatgattcatttgaaaaagagGAATTTCCAGTGTTTCCTGTGCTTGAAGTATCACATGACCAGACAGTGCCTCTCCAAGCACTTGGAAACCCATAAAGACGAAAAAGAATTCAAGTGCACCATTTGTTCTAAAACTTTCAGTCAACGAGACAATCTGAAGAAGCACCTAGCAACCCATAATGAAGTTGGTAAACATGCTCTGTGTGAAGTGTGTTCCAAAATGGTTGTAAAGCAAACGCTCTCTTCTCATATGAAGACTCACACCGAGAGGGTGAGATCGTTTAAGTGTGATGAGTGCAGGAAAGGTTTCTACACCAATGGAGACTTGACTAAGCATGTGACAATTCATATGACTGATCGATCTTTTAAATGCTCTCTTTGCTCGAAGGATTTCCGTTCCAAAATACACTTGAGAAAACATATGAAGTGTCATACGAAAATAGAAAAGCCACACCAATGTAACATTTGTGCCAAACAATTTATTTCTCCAAGCCAGTTGAAATATCACCAGCAGAAGATCCATAAGGGGGAAAAACGTTTCGAATGCGAGTTTTGTTCGAAGCGTTTCTTTTATAAGTGTGTAATGCTTTCACACCTACGAGTACATACAGCTGAGAAACCTTATCCATGTGATCAGTGCACCAAAAGGTTTTCCCACAAGAACTCTCTAAAAATACACTTGAGGATACATTCAGGTGAGAAGCCATTTGAATGTCAGGAATGTTCTGCAAAGTTCAATAGACAGTCACACTTGAAAAGCCACACAAGAGTCCACACTGGTGAGCAACCCTATCAGTGTGAGATTTGTTTTCAGAAATTTTCGCATAAAAACAGTTTGACCAATCACTTGCGTCGCCATTTAGGAATAAAGAAGTTCAAGTGTACCGGGTGTTCAAAAGTATTTGGGGACTCGAAGACCTTGAAAGTTCACTCTAGAATCCATACTGGAGAAAAACCATATACATGCTCAGTATGCTCAACCCGCTTTGCACATTATATCAGTTTCAAAAAGCATTTGCGCACACACTCTGGCGAAAAACCTTATAGCTGCCATGTATGTTCGAAAAACTTCGCACAAAAATCATATATTTCTCAACActttaaaaaaatgcacaaagaCACAACCTTCAGCTGTACCATTTGTTCGAAAAGTTTTCCTAAAGAAGGCCATTTGAAAATGCACGAACGAATGGCTGCTCATAAagggatgaaatga
- Protein Sequence
- MNNWNSITINMKGDLLLEDFSLICRICLTRNDLKPFVEEKSLQKRFMDITDIQVETQDSLPKNVCGNCLSTLEDISLFIDLSKYNNIGFLQDLINEKEKLYICQKDEITIIDDGMTIKIEQDYGDNDVTDYHSTGKQMNKQIYEVKNGKKSDERTNTNSFLLVCRICLAKENLRVFDGEEHLINVFRNITNIVVTTQDELPKNICSRCIDKLQGISSFIELSKSNNTKLHQVFSTQQDDISLEKSVVTTVVHEIKKEDQFRGRGSPELKFSSNFDQSHTCGKCGDTFSTKRGLMNHQKHVHTSDGRHIKNNDVLALWKCGLCNKDFPTSLSEDKHMESHFGNDFLLCFICGRAFIKREEFLLHITVHSVKEKKYSDKSSGNNRNNKSKEIQKNISDGILNNKSHLCDEKESAKKKKPRKILAIAIRGLRQRSFQCKVCLKDYLKEIHLTQHMKVHSEPSFHCEVCLGKFTYKHNLLTHMKVHSDERPFCCKICSKSFKFRHTLVKHLFLHTGKKPFECHNCQKQFAEKRNLAVHMRIHTGERPYKCSICLKAFTQKGDVKKHIDMIHLKKRNFQCFLCLKYHMTRQCLSKHLETHKDEKEFKCTICSKTFSQRDNLKKHLATHNEVGKHALCEVCSKMVVKQTLSSHMKTHTERVRSFKCDECRKGFYTNGDLTKHVTIHMTDRSFKCSLCSKDFRSKIHLRKHMKCHTKIEKPHQCNICAKQFISPSQLKYHQQKIHKGEKRFECEFCSKRFFYKCVMLSHLRVHTAEKPYPCDQCTKRFSHKNSLKIHLRIHSGEKPFECQECSAKFNRQSHLKSHTRVHTGEQPYQCEICFQKFSHKNSLTNHLRRHLGIKKFKCTGCSKVFGDSKTLKVHSRIHTGEKPYTCSVCSTRFAHYISFKKHLRTHSGEKPYSCHVCSKNFAQKSYISQHFKKMHKDTTFSCTICSKSFPKEGHLKMHERMAAHKGMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -