Gqui015806.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000312.1:351600-363294[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.5e-05 0.0029 19.0 0.7 2 23 31 52 30 52 0.97 2 17 1.8e-05 0.002 19.5 3.0 2 23 56 78 55 78 0.95 3 17 3e-05 0.0035 18.8 2.4 1 23 114 136 114 136 0.97 4 17 1.3e-06 0.00015 23.0 2.4 1 23 142 164 142 164 0.98 5 17 0.00082 0.095 14.2 0.6 1 23 170 192 170 192 0.97 6 17 7.9e-06 0.00091 20.6 0.3 1 23 198 220 198 220 0.98 7 17 0.00013 0.015 16.7 0.9 2 23 249 270 248 270 0.96 8 17 1.8e-05 0.002 19.5 3.0 2 23 277 299 276 299 0.95 9 17 0.0011 0.12 13.9 0.2 1 23 322 344 322 344 0.96 10 17 0.00018 0.021 16.3 0.9 1 23 350 372 350 372 0.99 11 17 1e-05 0.0012 20.2 0.1 1 23 378 401 378 401 0.98 12 17 2.8e-05 0.0032 18.9 1.4 2 23 408 429 407 429 0.97 13 17 0.00022 0.025 16.1 1.7 1 23 435 457 435 457 0.96 14 17 0.38 43 5.9 1.7 1 23 463 485 463 485 0.93 15 17 0.00014 0.016 16.7 1.9 1 23 491 513 491 513 0.97 16 17 8.7e-05 0.01 17.3 4.5 1 23 519 541 519 541 0.98 17 17 0.002 0.23 13.0 0.9 1 20 547 566 547 569 0.91
Sequence Information
- Coding Sequence
- ATGAAAAGTGGACAGGTTTACTGGTTAGATTTTCTCATCGAAGCCGTCAAAAACAGGCACGCAGGTATTCATTTCGTAAACGGCTCCGTCCCTTGTTCAGAATGCGGCAAACCGTACGAGACCAAACACCAATATATCAAGCATTACGAAACCCATTTCCAGGTCACGTGCACCGAATGCCACAAAACATTCTCGTCGGACGAGAACCTGCAGAGGCATCGGACCAGTTCCCATGAAAGAGCAGATTCAACTGATGTTCTCACTGAAAAGCAGGAAAACAGTTCGAAAGATGGAAAACATGTGAAAGAACACGCCACCGTTCATAGTGCAGCACTAGTACACGAGTGCGGAATATGTTCAAAACGTTTCGCAAAAAAATCCAAGTTGAAAATTCACGAAAACACCCACAGTGACCAGCGGCCTCATCAGTGCCCTTTTTGTCCCAAAACCTTCAAGAGGCGCGACGGCCTCCGGATTCACGAGAAGACCCACGAAACAAAGGGAATATACGCTTGTGACGTTTGCGGCAGGAAGTTCAAACTGAAAAGTTACATGGACGAGCATAAGTTGATGCATAATGAGGAACGGCCGTTCGAATGTACCGTTTGCGGCAGAGGTTTCGTTTCGAGCAACAAGTTGAAGTTGCACTTGAACATTCATTCGGGAAAAAAACCATTCAGATATTTTCTCATCGAAGCCGTCAAAAACAGGCATGCAGGTATTCATTTCGTTAACGGCTCCGTCCCTTGTTCCGTATGCGGCAAACCGTACGAGACGAAACACCAATATTTCAAACATTACGGAACCCATTTCCAAAATCACCAGGTCACGTGCACTGAATGCCACAAAACATTCTCGTCAGATGAGAACCTGCAGAGGCATCGGACAAGTTCCCATGAAAGAGCAGATTCAACAGACGTTCTCACCGAAACGCCGGACAACTGTTCGAAAGATGGAAAACGTTATGAGTGTCGATTTTGCCCGGAGAGTTTCCCATCCAAATCGGACTTTCTAGGCCACGAGGCAATGCACACCGGAAATAAATTATACCAGTGCTcggtttgtttaaaaaatttcgcAAAAAACTTCGCGTTAACGAATCACTCGAGAGTCCACACCGGTTGGAAACCCTATGAATGTGCCGTCTGCGGAAAGAAATTCACACAAGGGGGAGCAATGCGAATCCACCAAAGAACAGTCCACTCGGACCAGAAAACCATAAAGTGCGATCTTTGCCCGCAAACGTTCTCGTACAGGTCCAGCTTCCTGAGACACCTGAAGTACCACAAAGGCGAGAAAGCGTTCGAGTGCAAAGAGTGTCCGAAGAAATTCTTCTACAAACGCCTCCTGAGGGAACACGAGACGATCCATACGGGGGAATTGCCCTACTCTTGTGCCTTCTGTTCGAAGCGTTTTCGTTGTGCGGCAGATGTGAAACAACACGCCACCATTCATACTGCGGCGCTACTACACGAGTGCGGAGTATGTTCAAAACGTTTCGCAAAAAAATCCAAGTTGAAAATTCACGAAGACACCCACAGTGACCAGAAGCCTCATCAGTGTGCATTTTGCCCTAAAACGTTCAAAACGACCAACGGCCTCCAGAAACACAAGAAGACACATGAAACGGAGGAAAAATATGACTGTGACGTTTGTGGCAGGAAGTTCAAACTGAAAAGTTACTTGGACGAGCATAAGTGGACACATAGCGAGGAACGGCCCTTCGAGTGTACCGTTTGGACAGAAGTTTCTATTCGAGGCACAATTTAA
- Protein Sequence
- MKSGQVYWLDFLIEAVKNRHAGIHFVNGSVPCSECGKPYETKHQYIKHYETHFQVTCTECHKTFSSDENLQRHRTSSHERADSTDVLTEKQENSSKDGKHVKEHATVHSAALVHECGICSKRFAKKSKLKIHENTHSDQRPHQCPFCPKTFKRRDGLRIHEKTHETKGIYACDVCGRKFKLKSYMDEHKLMHNEERPFECTVCGRGFVSSNKLKLHLNIHSGKKPFRYFLIEAVKNRHAGIHFVNGSVPCSVCGKPYETKHQYFKHYGTHFQNHQVTCTECHKTFSSDENLQRHRTSSHERADSTDVLTETPDNCSKDGKRYECRFCPESFPSKSDFLGHEAMHTGNKLYQCSVCLKNFAKNFALTNHSRVHTGWKPYECAVCGKKFTQGGAMRIHQRTVHSDQKTIKCDLCPQTFSYRSSFLRHLKYHKGEKAFECKECPKKFFYKRLLREHETIHTGELPYSCAFCSKRFRCAADVKQHATIHTAALLHECGVCSKRFAKKSKLKIHEDTHSDQKPHQCAFCPKTFKTTNGLQKHKKTHETEEKYDCDVCGRKFKLKSYLDEHKWTHSEERPFECTVWTEVSIRGTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -