Gqui015813.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000312.1:281247-307739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.11 12 7.6 0.7 1 23 181 203 181 203 0.96 2 21 2.3e-06 0.00027 22.3 2.6 1 23 209 231 209 231 0.98 3 21 0.00019 0.022 16.2 0.2 3 23 238 258 236 258 0.98 4 21 0.04 4.6 8.9 3.3 5 23 269 288 267 288 0.95 5 21 0.00024 0.028 15.9 2.5 1 23 293 315 293 315 0.95 6 21 0.00038 0.044 15.3 0.2 1 23 320 343 320 343 0.97 7 21 2.9 3.3e+02 3.1 9.3 5 23 359 377 348 377 0.87 8 21 4e-05 0.0047 18.4 5.6 1 23 381 403 381 403 0.98 9 21 0.00041 0.047 15.2 2.7 1 23 409 431 409 431 0.95 10 21 5.8e-06 0.00067 21.0 1.6 3 23 440 460 439 460 0.98 11 21 4e-05 0.0047 18.4 2.1 2 23 466 487 465 487 0.97 12 21 1.2e-06 0.00014 23.1 1.7 1 23 492 514 492 514 0.99 13 21 3.4e-05 0.0039 18.6 3.9 1 23 549 571 549 571 0.97 14 21 0.13 15 7.3 0.6 2 23 577 596 576 596 0.94 15 21 0.0017 0.19 13.3 3.0 1 23 602 624 602 624 0.98 16 21 5.6e-05 0.0065 17.9 1.6 1 23 630 652 630 652 0.98 17 21 1.5e-05 0.0017 19.7 2.3 1 23 662 684 662 684 0.99 18 21 0.0008 0.092 14.3 0.9 1 22 690 711 690 711 0.96 19 21 0.037 4.3 9.0 4.7 2 23 719 740 718 741 0.92 20 21 2.2e-05 0.0025 19.2 0.6 1 23 752 774 752 774 0.98 21 21 0.0002 0.023 16.2 3.7 1 23 780 803 780 803 0.96
Sequence Information
- Coding Sequence
- ATGGATTGGCGACCAAGTGATATCCACCATGTGGAATCGATAGATATTAAAATTgaagatgaaataattaaaaatgaatatGATACAGAAGCATCCTCATTTCTCCCAGTTGAGTTGAAAGATGAAGGAGCAGAAGAATATGTGGAGGAAATCTTCATTGAAAGTGAACAAGCAGAGGAATATCTGGAAGAAATCATCATTGAGGTCGTTAAAGATGAACTTCCCTCTAAAAAATTCCAAGTTGAAAATAAAGGCATGTGGTTGCCTCAAGAGACAGAATTAGTTGACATCATAGAAGAAGGATCTCTTGATATCAAGAATGAAGTTTGTGGCACGGATTTTCCGTCATTGACCACCCAAGATATCACCGACAAAGGGGAATGGACTGGGGATGACTCAGTTTGGTTGAAAGAAGAGAGTGAGTTTGATGAACCCTTAGCCACAAATTCGAGCATTAAGATTGAAACAGAAGAAATGAATCACCCGAACGAAGTCCTTCCTACAAACCTAGAAGAAAGCAGGCCCATAAAAGACAAGCCGTTTTGCTGTGGAATTTGCCTCAAGAGTTTCCTTTGGCCCTACGAACTGAAACAACACATTCAAGTACACACAGGTGAAAAACCGCACGTATGCAACATCTGCCAAAAAAGCTACAGTAGCAAGGCTTCCTTGTACAATCACTTGCGCACCCACTCAAAAAAGCCATTCGGTTGCAATGTGTGCCAAACAAGCTTTGCAAGGGTTAGTCAGCTCATCATTCATGAAAAAACCCACCTACAAGGCAAGATTGGGGAGTTTCAGTGCCAATGCGGGAAGGTTTTCTTCAGGCGGCACTACATCCTCAGACACCAGAGACAGATGCATAACAAGAGAAGTTTTCAATGTGAGACGTGTCACCAGGATTTTGACACGAAATTTAATTTAAGATGGCATCAGGTTGAACATTTGGAAGGGGAATTTCAATGCCCTGAATGTGCAGAGAGTTTCGACTTACTCGAAGATTTGACAAAACACAGATTGAAATTGCACCCTCGTCAAAAATTTTGCTGTGTATATTGCTACAAGACCTTCCAACAATGTGGAAAATCTTTTTCATTTAAATGGGCTTTGACCGAGCACAAGGCACTACACGATAAAAAGCATCAGTGCCACGTGTGTGGTAAGACATACGCCTATAACAATTCGCTGAGCCATCATCTGCGCATCCACTCGAATACGTCCTCATACTGCTGTGACCTCTGCGGCATGGAGTTCAAACAGAGGGACAGTCTCTATAGGCACAAACTGGATCATATAGATAGAGATAATGCCCTCTTGTGTGATTTGTGTGGAAAACGGTTTACTTCAAGAGCCAACTTCAGAAGTCACAGAAGAATCCACAGGAAGGATCTGTTAGAATGCTGTTATTGCGGGAAGAAATTTGTCAGGAAGAATGGGTACTGGGAGCACATGATGCGTCACAAGGAGAGGCCGTTCAAATGTACCGTGTGTTCTATGAGTTTCATCAACGAGAAAAACCTGCAGAGTCACATGAAAACTCACGAACAGAAGATCGGGTTGCTCGTCAAGGAGAAAAGTGGTCCAGATTCCAATGCACCAGTTCCTTCCACCAACAACAAAGAAAACTTGGAAAATAATGCCCCTTACCACTGCTCCACCTGCGGCAAATCATTTGCTTTCAAGAGTTCCCTGCGAGACCACGAAAGATTCCACTTGGAAGGTGCCCTCGAATGCCCTATATGTCACAAGATCGTCAAAGCGAAGCTGGACAGACACATGCAAATCCACTCCGACGAGAAGCCCTACGAGTGTCCCATCTGCCACAAACGCTTCCGTTGGAGATCGATTCTGTTTAGTCACCAGAAGACTCATTCCATGGATGCCCCTTTCACCTGCTCGGTGTGTTCAAAGGGTTTCTTTACGAGCAGGGCGTTGGCCCGTCATCGGAAGAGTCACGTCACCACCGAGGATGACCCCAAGCCGTTCCGGTGCGAAGTTTGCGACCAGAGGTTCTGTTACATGTCGATGCTGGAAGCGCATCAACGGATGCACACTGGCGAGAGGCCGTTCCAGTGCGACATCTGCAAGAATACGTTCCGGATCAGAGCTCTGTTGACGAAACACCAGAAGAAATACCGAGAAAAAGAGCCTTTGCCCTGCTCCGAGTGCCCCAGTGTGTTCTGCACTAAGAAGGACCTCTGCATCCACAAAACGGCCCACCATACTACCAAAGTCCTCACGGGGGAACGTCCCCACCAGTGCAGCATGTGTCCCCAAGCTTTCAAAGCGAAAGGCAGCCTCAACAAGCATATTATGATACACACTGGAGAGCGCCCGTACCAGTGCCAATTCTGTCCGCAGAGCTTCCAGAGGAGCCCCCATCTGAAGAAGCATGTACAGAACAAGCATAGCGGGGACAGGAAGAGGAAGGCTGGTGAGAAAGCGAAGCGGGTTGTTATTAAGGTGTATAGGGTGAAAAAGGTTTAG
- Protein Sequence
- MDWRPSDIHHVESIDIKIEDEIIKNEYDTEASSFLPVELKDEGAEEYVEEIFIESEQAEEYLEEIIIEVVKDELPSKKFQVENKGMWLPQETELVDIIEEGSLDIKNEVCGTDFPSLTTQDITDKGEWTGDDSVWLKEESEFDEPLATNSSIKIETEEMNHPNEVLPTNLEESRPIKDKPFCCGICLKSFLWPYELKQHIQVHTGEKPHVCNICQKSYSSKASLYNHLRTHSKKPFGCNVCQTSFARVSQLIIHEKTHLQGKIGEFQCQCGKVFFRRHYILRHQRQMHNKRSFQCETCHQDFDTKFNLRWHQVEHLEGEFQCPECAESFDLLEDLTKHRLKLHPRQKFCCVYCYKTFQQCGKSFSFKWALTEHKALHDKKHQCHVCGKTYAYNNSLSHHLRIHSNTSSYCCDLCGMEFKQRDSLYRHKLDHIDRDNALLCDLCGKRFTSRANFRSHRRIHRKDLLECCYCGKKFVRKNGYWEHMMRHKERPFKCTVCSMSFINEKNLQSHMKTHEQKIGLLVKEKSGPDSNAPVPSTNNKENLENNAPYHCSTCGKSFAFKSSLRDHERFHLEGALECPICHKIVKAKLDRHMQIHSDEKPYECPICHKRFRWRSILFSHQKTHSMDAPFTCSVCSKGFFTSRALARHRKSHVTTEDDPKPFRCEVCDQRFCYMSMLEAHQRMHTGERPFQCDICKNTFRIRALLTKHQKKYREKEPLPCSECPSVFCTKKDLCIHKTAHHTTKVLTGERPHQCSMCPQAFKAKGSLNKHIMIHTGERPYQCQFCPQSFQRSPHLKKHVQNKHSGDRKRKAGEKAKRVVIKVYRVKKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -