Gqui032626.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gonioctena quinquepunctata
Gene Symbol
Snai1
Assembly
GCA_018342105.1
Location
JAFIRS010000143.1:775804-841479[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.076 8.7 8.1 0.9 1 23 44 67 44 67 0.95
2 23 0.071 8.2 8.1 0.2 1 21 113 133 113 134 0.92
3 23 0.04 4.6 8.9 1.6 1 23 183 206 183 206 0.96
4 23 0.06 6.9 8.4 2.9 1 23 265 288 265 288 0.95
5 23 0.75 87 4.9 0.2 1 17 297 313 297 314 0.91
6 23 0.00038 0.043 15.3 1.0 1 23 372 395 372 395 0.97
7 23 0.00032 0.037 15.5 0.8 2 23 403 424 402 424 0.96
8 23 4.5e-07 5.2e-05 24.5 1.2 1 23 430 452 430 452 0.98
9 23 0.053 6.2 8.5 0.1 1 13 458 470 458 471 0.89
10 23 0.0012 0.14 13.7 2.6 1 23 590 613 590 613 0.96
11 23 2.3e-06 0.00027 22.3 0.5 2 23 621 642 620 642 0.97
12 23 3.2e-06 0.00037 21.8 1.3 1 23 648 670 648 670 0.98
13 23 1.5e-08 1.7e-06 29.2 1.2 1 23 676 698 676 698 0.98
14 23 0.00027 0.031 15.8 0.1 2 22 705 725 704 725 0.96
15 23 1.4 1.6e+02 4.1 0.2 2 23 802 823 801 823 0.83
16 23 0.11 13 7.6 6.0 1 23 829 851 829 851 0.99
17 23 0.0042 0.49 12.0 1.6 1 23 857 879 857 879 0.94
18 23 8.5e-05 0.0098 17.3 4.9 1 23 885 908 885 908 0.98
19 23 0.026 3 9.5 1.2 1 23 920 943 920 943 0.91
20 23 0.00062 0.072 14.6 0.7 3 23 954 974 952 974 0.97
21 23 6e-07 6.9e-05 24.1 2.7 1 23 980 1002 980 1002 0.97
22 23 7.7e-06 0.00089 20.6 0.5 1 23 1008 1030 1008 1030 0.99
23 23 0.0017 0.2 13.2 0.1 2 21 1038 1057 1037 1058 0.94

Sequence Information

Coding Sequence
ATGGAAATACATGAATTAAAGAGTGAACATGGGATAGAAATAAAAGATGAGAAAGAAAGTGAAGATGAGAAGGAAAAGGACGATGAGGTAGATAGTGAATATACGACAAAAAGTGATGTAAAGAAACTATATCACTGCAAAAGTTGTGGGAATAATTACCGTACAGTCGCTGGTCTGAGGATTCATGTGACGAAAATTCACAACAAGATTGATAAGATAAAAAGTGATGGAAAGGAATTGTATCACTGCAAAACTTGTGGAAATAATTACCGTAGCACTAGAGGTCTGAGGACGCCCCTGGTTAGGCACATCCGTACTCATTCGGGGGATAGGCCGTATCTATGTAACATCTGCGGAAATGGGTATTTTTCGAAAACCGCTTTGTTGGCACATAAGAAGAAATGTTCAAACGTTACAATGAAAAAACACGAATTGAACAGTGAACATGGGAAGGAAATGAAAGATAAGGAAGAAAGtgaagatgagaaaaaaaataacgaGGAGGTAGATAGTGAATATACGATAAAAAGTGATGTAAAGAAACTGTATCACTGCGAAAGTTGTGGGAATAATTATCGTACAGTTACTGGTCTGAGGAAGCATAGGGCGAAAATTCACAGGGTTGATACGATAAAAATCTCATTCATCAACTTTGGTGGAAACGTTACAATGGAAATACATGAATTGAAAAGTGAACATGGGATGGAAATAAAAGATGAGAAAGAAAGTGAAGATGAGAAGGACGATGAGGTAGACAGTGAATATACGACAAGAAGTGATATAAAGAAACTGTATCACTGCAAAAGTTGTGGGAATAATTACCGTACAGTCACTGGTCTGAGGAGGCATAGGACGATAACTCACAACAAGATTGATAAAAAGGAATTGTATCACTGCAAAACTTGTGGAAATAATTACCGTACCGCAATTAGTCTGAGAATCGTTAAAATAGAAGCAGATGAAATAAAAAGGGAAGATGGGACAGAAATTGAAGATGGGATAGCAATCAAAATTGAGAAAGAAAATGAAGATGAGAAAGAAAGTggagatgagaaaaaaaatggagATGAGATAGATAGTGAATATGAGATAGAAAGTGAAGATGATAAATTATATCAGTGCAATATGTGCGAGAAATATTACGAGTCAGCAAATGGTCTGAAGAGGCATAAGATGAAAATTCACTATAGGGTCGACCTTTCTTTAATTTGCGATATTTGCGGAAAAAAGATCTCCAACAAGGAAAAACTGAAATTCCACATGCGCACGCATACGGGAGATAAACCTTATCCTTGTGAGATGTGTGGGAAATGTTTTGTGAGGAAGCCCCAGATGAGAGAACACATGAGGattcatacgggagaaaaacctCATATTTGTCCTGATTGTGGGAGGGGTTTTTCTCAAAGAATCATCATAATAGTAGAAGATGAAATAGAAAGGGAAAATGGGATTGAATATGAATATGAGATAGAAAGTGAAAATGAGGAAGAAAATGAAGATGAGATAGAAAGTgaagatgataaaaaaaatgaagatGCGACAGAAAGTAAAGATGAAAAAAAGAAACTCATATCTTGTTGCAAAATGGAAGAAGATGATACAGAAAGTGAAGATGGAAAGGAAAATGGGATAGAAAAAGAAGATGATGAGCAAGAAAGTGAAGATGAGCAAGAAAGTGAAGATGAGGAAGAAAGTGAAGATGAGAAAGAAAATCGGGATGATAAAGATAGTGACTATGAGATAGAAAGTGAAGACGATAAATTGTATGCGTGCAACATTTGCGAGAAATTTTACGAGACACCTACTTGTCTGAAAAACCATAAAATGAGAATGCACTATAGGGTTGACCTGTCTTTAATTTGTGATATTTGCGGAAAAACGATCTCAACCAAGGAAAAACTAAAACTCCACATGCGCACGCATACGGGAGATAAACCTTATTCTTGTGAGGTGTGTGGGAAACGTTTTGGGAGGAAGTACCAAACGAAAGAACATATGAGGGTCCATACGGGAGAGAAACCTTACATTTGTCCCCATTGTGGGAAGGGGTTTTCTCAAAGGTCGTCTCTGGTTATGCACATGCGCACTCATACGGGGGAAAGGCCAAAACAATGTAATATTTGCGGGAATGGGTTCATTTCAAAAACCGCTTTGTTGGCTCATATGAGGAAATGTCCAACCGTCAAAACCGAAGAAGACGACATAGACATTAAACCTGATGTATCACAATTGAAAGTCAAATCCAAGAGGGGGAGAAAAAAGTCCAATAAGAATCAGTTGAAAGATGAGAGTGAAGGCCCAACTAAAGCGAAGAAAGACAAAAAATCCCGCCGCAAGAGTGACAGTCCGAAAAAAATCGTCATGAGCCACCCCCCTCCAATGGAACTAGAAGAACCGATCCAATGCGACGTTTGCAGTGCTTCTTATACGAACAACGTCGATTTCGCGTTCCATTCGTTGAGTCACAGCGCTGACGGAAAGTACACCTGCCACATGTGCAACTACAGAAACAGTTCCAAGTACCACGTAGAAATGCACGTGAGAACGCACGAGGGTACCACCAAGTACAAATGCGAGATTTGCGACAAAGCGTTCACCATCAGCACACACGCTTTGGAGCACAAAAATTTCCATACCGGGGAGAAACCCTTTCAGTGCGAGATATGCGGGAAACACTTCATGTTCTCCTGGCACCTTTCATCGCACAGAAGGACTTCCCATTACGAGATTCTCACCGGCAAGCCTCTGGTGAAGTTCGACTGCGCGGCTTGTAACAAGCATTATGAGTCCGCGAGCGGCTTGAGGCGGCACAACATCAAAAAGCACAAATTCAACGAGATAGATCTTTCCGTCATTTGCGAGATCTGCGGAAAGAGGCTGTCGAGCAAAGAGAAACTCAAGTTCCACTTGCGTACGCACACTGGCTACAAGCCGCACGCGTGTCATGTGTGTCCGAAAAGTTTCTCGAAGAAGGATCAGCTCATCGAGCATATCCGCACGCACACCGGGGAAAAACCTTATGTTTGCAAGCTTTGCGGCAAAGGTTTCGCGCAGCGAACCCCCCTCAAGACGCATGAGCGGACTCACAATGTTGATAGGGCAGGGAGCACTTGTACTGTTTGCGGAATGGTTTTCAGGCTGAAGGACGAGTTTGAAAACCATGTCAAGGTGTGTTTGTCGGCTCAGTTGCCGTTCCCTTATATTTTGAGTTATAAAACTGAAAGTCAGTGA
Protein Sequence
MEIHELKSEHGIEIKDEKESEDEKEKDDEVDSEYTTKSDVKKLYHCKSCGNNYRTVAGLRIHVTKIHNKIDKIKSDGKELYHCKTCGNNYRSTRGLRTPLVRHIRTHSGDRPYLCNICGNGYFSKTALLAHKKKCSNVTMKKHELNSEHGKEMKDKEESEDEKKNNEEVDSEYTIKSDVKKLYHCESCGNNYRTVTGLRKHRAKIHRVDTIKISFINFGGNVTMEIHELKSEHGMEIKDEKESEDEKDDEVDSEYTTRSDIKKLYHCKSCGNNYRTVTGLRRHRTITHNKIDKKELYHCKTCGNNYRTAISLRIVKIEADEIKREDGTEIEDGIAIKIEKENEDEKESGDEKKNGDEIDSEYEIESEDDKLYQCNMCEKYYESANGLKRHKMKIHYRVDLSLICDICGKKISNKEKLKFHMRTHTGDKPYPCEMCGKCFVRKPQMREHMRIHTGEKPHICPDCGRGFSQRIIIIVEDEIERENGIEYEYEIESENEEENEDEIESEDDKKNEDATESKDEKKKLISCCKMEEDDTESEDGKENGIEKEDDEQESEDEQESEDEEESEDEKENRDDKDSDYEIESEDDKLYACNICEKFYETPTCLKNHKMRMHYRVDLSLICDICGKTISTKEKLKLHMRTHTGDKPYSCEVCGKRFGRKYQTKEHMRVHTGEKPYICPHCGKGFSQRSSLVMHMRTHTGERPKQCNICGNGFISKTALLAHMRKCPTVKTEEDDIDIKPDVSQLKVKSKRGRKKSNKNQLKDESEGPTKAKKDKKSRRKSDSPKKIVMSHPPPMELEEPIQCDVCSASYTNNVDFAFHSLSHSADGKYTCHMCNYRNSSKYHVEMHVRTHEGTTKYKCEICDKAFTISTHALEHKNFHTGEKPFQCEICGKHFMFSWHLSSHRRTSHYEILTGKPLVKFDCAACNKHYESASGLRRHNIKKHKFNEIDLSVICEICGKRLSSKEKLKFHLRTHTGYKPHACHVCPKSFSKKDQLIEHIRTHTGEKPYVCKLCGKGFAQRTPLKTHERTHNVDRAGSTCTVCGMVFRLKDEFENHVKVCLSAQLPFPYILSYKTESQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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