Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010000992.1:191781-231895[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.12 14 7.4 0.1 2 23 116 137 115 137 0.95

2 26 0.00011 0.012 17.0 4.5 1 23 143 165 143 165 0.97

3 26 0.00016 0.018 16.5 0.5 3 23 172 192 170 192 0.98

4 26 0.094 11 7.8 2.9 5 23 203 222 201 222 0.95

5 26 0.00019 0.022 16.2 2.5 1 23 227 249 227 249 0.96

6 26 6.8e-05 0.0078 17.7 0.4 1 23 254 277 254 277 0.95

7 26 0.0047 0.54 11.9 4.4 1 23 282 304 282 304 0.97

8 26 0.00075 0.086 14.4 4.3 2 23 330 351 329 351 0.97

9 26 0.0017 0.2 13.2 1.3 1 23 362 385 362 385 0.93

10 26 0.3 35 6.2 4.8 1 23 390 412 390 412 0.96

11 26 0.0021 0.24 13.0 2.7 2 23 439 460 438 460 0.77

12 26 0.0019 0.22 13.1 0.9 1 23 466 488 466 488 0.94

13 26 0.00092 0.11 14.1 1.5 1 23 495 517 495 517 0.94

14 26 1.9e-05 0.0022 19.4 4.1 1 23 523 545 523 545 0.98

15 26 0.00043 0.05 15.1 0.9 1 23 551 573 551 573 0.94

16 26 0.00077 0.088 14.3 2.2 1 23 577 599 577 599 0.96

17 26 0.0001 0.012 17.1 2.3 1 23 604 626 604 626 0.98

18 26 0.013 1.5 10.5 3.4 2 23 661 682 660 682 0.96

19 26 0.18 21 6.9 4.2 1 23 688 708 688 708 0.93

20 26 2.4e-06 0.00027 22.2 0.8 1 23 714 736 714 736 0.98

21 26 0.025 2.9 9.6 2.5 1 23 742 764 742 764 0.97

22 26 7.7e-07 8.9e-05 23.8 0.9 1 21 785 805 785 806 0.96

23 26 0.0062 0.71 11.5 3.3 1 23 813 835 813 835 0.98

24 26 0.3 35 6.2 2.9 2 23 842 863 841 863 0.96

25 26 1.6e-05 0.0018 19.6 0.9 1 23 869 891 869 891 0.96

26 26 5.5e-05 0.0063 17.9 5.8 1 23 897 920 897 920 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.12	14	7.4	0.1	2	23	116	137	115	137	0.95
2	26	0.00011	0.012	17.0	4.5	1	23	143	165	143	165	0.97
3	26	0.00016	0.018	16.5	0.5	3	23	172	192	170	192	0.98
4	26	0.094	11	7.8	2.9	5	23	203	222	201	222	0.95
5	26	0.00019	0.022	16.2	2.5	1	23	227	249	227	249	0.96
6	26	6.8e-05	0.0078	17.7	0.4	1	23	254	277	254	277	0.95
7	26	0.0047	0.54	11.9	4.4	1	23	282	304	282	304	0.97
8	26	0.00075	0.086	14.4	4.3	2	23	330	351	329	351	0.97
9	26	0.0017	0.2	13.2	1.3	1	23	362	385	362	385	0.93
10	26	0.3	35	6.2	4.8	1	23	390	412	390	412	0.96
11	26	0.0021	0.24	13.0	2.7	2	23	439	460	438	460	0.77
12	26	0.0019	0.22	13.1	0.9	1	23	466	488	466	488	0.94
13	26	0.00092	0.11	14.1	1.5	1	23	495	517	495	517	0.94
14	26	1.9e-05	0.0022	19.4	4.1	1	23	523	545	523	545	0.98
15	26	0.00043	0.05	15.1	0.9	1	23	551	573	551	573	0.94
16	26	0.00077	0.088	14.3	2.2	1	23	577	599	577	599	0.96
17	26	0.0001	0.012	17.1	2.3	1	23	604	626	604	626	0.98
18	26	0.013	1.5	10.5	3.4	2	23	661	682	660	682	0.96
19	26	0.18	21	6.9	4.2	1	23	688	708	688	708	0.93
20	26	2.4e-06	0.00027	22.2	0.8	1	23	714	736	714	736	0.98
21	26	0.025	2.9	9.6	2.5	1	23	742	764	742	764	0.97
22	26	7.7e-07	8.9e-05	23.8	0.9	1	21	785	805	785	806	0.96
23	26	0.0062	0.71	11.5	3.3	1	23	813	835	813	835	0.98
24	26	0.3	35	6.2	2.9	2	23	842	863	841	863	0.96
25	26	1.6e-05	0.0018	19.6	0.9	1	23	869	891	869	891	0.96
26	26	5.5e-05	0.0063	17.9	5.8	1	23	897	920	897	920	0.96

Sequence Information

Coding Sequence: ATGGAGGAAATCATCATTGAGGTCGTTAAAGATGAACTTCCatctgaaaaatttcaaatagaaaatgaAGGCATGTCGCTGCTGCAAGAGATGGAAATGGTTGACATCAAAGAAGAACGATCTCCTGGGACCAAGAATGAAGATTGTGGCACGGATATAACCGACGAAGGAGAATGGGCTGGGGATAACTCGACAGTTTGCTTGAAGAAAGAAGAGAATGATTTTGATGTACTCTCTGCAACAAATTCAAACATTAAGGTTAAAACAGTAGAAGAAATAAATCACCCGAAAGAAGCCCTTCCTACAAACCTAAAAGAAAGCAGGCCCATAAAAGACAAGCCGCTTCGCTGTGGAATTTGCCTCAAGAGTTTCCTTTGGCCATACGAACTGAAGCAACACATTCAAGTACACACAGGGGAAAAACCACACGTATGCAACATCTGCCAAAAAAGCTACAGTAGCAAGGCTACCTTGTACAATCATTTACACACTCACTCAAAAAAACCATTCGGTTGCAATGTCTGCCAAACAAGCTTTGCAAGGGTTAGTCAGctcataattcataaaaaaacccACCGACAAGGCAAGTTCGGGGAGTTTCAGTGCCAATGCGGGAAGATTTTCTTCAGGCGGCATTACATCCTCAGACACCAGAGACAGGTGCACAACAAGAGACGTTTTCAATGTGGGAGGTGTCACAAGGGTTTCGATACGAAATTTAGTTTGAGAAGACATTGGGTTGTACATTCGCATGGGAAGTTTCAATGCCCTGATTGTGAAGAGAGTTTCGAGTTTCTTAGAGATTTGACGAAACACAGGCTTCAAGTTCATCGCCTTGCCAAATTTTGCTGTAAATATTGCCCAAAGGTTTTTGTGTTGCTAAAATATTTTCTCCTGCATCAAAAAAGGCACACACTGGAAGAAATCAATTCAACCAGAGTATCGGTAGTGCCTAAAGAGAATGATTCGAAAGCATTTAGCAGATGGCAATGTGACTATTGCAAAGAGTGCTTCCCAACCAAGAAGTTGATGGTTCATCACAGAAGAATTCATCGGGTTCGGGTTAGACATTCGGATGGGGAGTTCCAATGCCCTGAATGTGAAGAGAGTTTCGAGTTACATAGAGATTTGACACAACACAGGTTTCAAGTTCATCGCCTTGCAAAATTTAACTGTAAATATTGCCCCAAGGGTTTTATGTTGCTACAATGTTTTCTCCGGCATTCAAAAAGGCACACAATGGAAGAAACCAGTTCAACCAGAGTATCGGTAGTGCCGACTAAAGAGAATGATTCGAAAGCATTTAGCAGCTGGCAATGTGATTATTGCAAAGAGTGCTTCCCATCCAAGAACTTGATGGTTCATCACAGAATAATTCATAATACCGAAGGCCCTTTTTTATGTGAAATTTGTGGTCGATCCTTTTCACTAATAAGTTTCTTTAGCCGCCACAGAGACTCGCATGCGAAGATGAAGATGATGCATCAATGTGAGGAATGCGGAAAACTGTATAAGAGCAAATGGAAGCTTACAGAACATCGAGGGTTACACTCAGAGTTTCCCGATTTCCAGTGCGAAACCTGTGGAAAATGTTTCAGGAAGAAGAGCGCTCTGGATGATCACAGGAAAAACCATACGGTAATAGGACCGTTTCTGTGTGACATTTGCGGGAAGAAGTTCAGCGAGAAGAGTCGGTTTGATGCGCATTATAAATGGCACAGACTCAAGCACGAGTGCTTCGTGTGCGGGAGGAGATACAgGCAACGAAAATCTTACATCGAGCACATGAGTGGTCACAAGCGAAGGCATTTCAGATGTTCTGTCTGCTCAACAACTTTCATAAGCGAAGTGAAGTTGAAACATCATATGTTGATGCATGAAAAAAATAACGATTCTGACGATAATCCTCCAGAATCTCCCAAACCTAATGTTCCGAAGGATCTCGACGCAAAAAAAGAAAGTTCACAAAATAGTGGTCTTTCGTGTAAAGACTGCGGAAAAACGTATTCGTGTAAGAGTCGCTTGCTAATCCACGAGAAGAAGCATTCGGATGACACCCCCTTCGAGTGCCCCATTTGCTTCAAGAAGATGAAAACTCACCTAAAACGTCACATGAAAATCCATTCAGAAGAAAAACCCCATAAGTGTCCAGTTTGTGAAAAAGgttttcgTGTGAATGACCAACTTCTAGCCCACCAGAAGACGCACTCTGTAGAGCCCCCTTTCACCTGCTTGGTTTGCTCGAAGGGTTTTTTCTCGAGAAGGTGTTTGGCAGTACACAGTAAAGTTCATCCAGAAATGGCGTTGAAGATTCGGGAGATGGAACTATCTGAGCCTTCCAAGCCACTGGTGTACCCATGTCCTAATTGTGGCAAGACATATTCGCAGAAACGTCATTTGTGGCGTCACCAGAAAGACTTTCCCGACAACAACCCCTTCACTTGTCCCTTGTGCCCCAGCAAATTCTGCTCGAAACGGCAATTCATCTTGCACGAGAAGTCCCATCGCGGGCCCGACCCCCTGACATGCTCCTTCTGCTTCAAGAAATTCGACAAATACAGCCGCGTGAAATCGCACGAAAAAATCCATACGGGAAAAGACTGCTACGATTGTTTGTTATGCTCGAAAAAATTCACCACTAAGAGCTGGTTGAGGAGCCACATGGGAATTCATATGGATGAAAGGCCTTTTCAGTGTCACATCTGTGAGAAGAGATTCAGGAGGAAAACCCATTTGAGGGGTCATACTGAGAAGGTACATGGGAAGAAAAAGGAGAAGGAAGGAAAGAAGAAAGAGAAAGACGGGAGGACTGAGAAGAAAAAGGTCGTGATCAAGGTGTTTCGGTATAAGAAAGACACTTCGTGA
Protein Sequence: MEEIIIEVVKDELPSEKFQIENEGMSLLQEMEMVDIKEERSPGTKNEDCGTDITDEGEWAGDNSTVCLKKEENDFDVLSATNSNIKVKTVEEINHPKEALPTNLKESRPIKDKPLRCGICLKSFLWPYELKQHIQVHTGEKPHVCNICQKSYSSKATLYNHLHTHSKKPFGCNVCQTSFARVSQLIIHKKTHRQGKFGEFQCQCGKIFFRRHYILRHQRQVHNKRRFQCGRCHKGFDTKFSLRRHWVVHSHGKFQCPDCEESFEFLRDLTKHRLQVHRLAKFCCKYCPKVFVLLKYFLLHQKRHTLEEINSTRVSVVPKENDSKAFSRWQCDYCKECFPTKKLMVHHRRIHRVRVRHSDGEFQCPECEESFELHRDLTQHRFQVHRLAKFNCKYCPKGFMLLQCFLRHSKRHTMEETSSTRVSVVPTKENDSKAFSSWQCDYCKECFPSKNLMVHHRIIHNTEGPFLCEICGRSFSLISFFSRHRDSHAKMKMMHQCEECGKLYKSKWKLTEHRGLHSEFPDFQCETCGKCFRKKSALDDHRKNHTVIGPFLCDICGKKFSEKSRFDAHYKWHRLKHECFVCGRRYRQRKSYIEHMSGHKRRHFRCSVCSTTFISEVKLKHHMLMHEKNNDSDDNPPESPKPNVPKDLDAKKESSQNSGLSCKDCGKTYSCKSRLLIHEKKHSDDTPFECPICFKKMKTHLKRHMKIHSEEKPHKCPVCEKGFRVNDQLLAHQKTHSVEPPFTCLVCSKGFFSRRCLAVHSKVHPEMALKIREMELSEPSKPLVYPCPNCGKTYSQKRHLWRHQKDFPDNNPFTCPLCPSKFCSKRQFILHEKSHRGPDPLTCSFCFKKFDKYSRVKSHEKIHTGKDCYDCLLCSKKFTTKSWLRSHMGIHMDERPFQCHICEKRFRRKTHLRGHTEKVHGKKKEKEGKKKEKDGRTEKKKVVIKVFRYKKDTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -