Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010000317.1:279444-286426[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.018 2 10.0 1.1 1 23 25 47 25 47 0.97

2 18 5.1e-05 0.0059 18.0 1.3 5 23 62 80 59 80 0.93

3 18 3.4 4e+02 2.8 3.2 1 20 86 105 86 108 0.93

4 18 0.00021 0.024 16.1 1.4 1 23 113 135 113 135 0.98

5 18 2e-05 0.0024 19.3 1.6 1 23 141 163 141 163 0.98

6 18 1.7e-06 0.0002 22.7 0.3 1 23 169 191 169 191 0.95

7 18 1.9e-06 0.00022 22.5 0.7 1 23 197 219 197 219 0.97

8 18 0.0087 1 11.0 6.9 1 23 225 248 225 248 0.96

9 18 8.8e-07 0.0001 23.6 2.0 1 23 254 276 254 276 0.97

10 18 4e-05 0.0046 18.4 0.3 3 23 342 362 341 362 0.98

11 18 7.8e-05 0.009 17.5 0.7 1 23 370 392 370 392 0.98

12 18 8.6e-05 0.0099 17.3 0.6 1 19 410 428 410 432 0.94

13 18 1.5e-05 0.0017 19.7 2.1 1 23 438 460 438 460 0.98

14 18 2.4e-05 0.0028 19.0 0.4 1 23 464 486 464 486 0.95

15 18 6.9e-06 0.00079 20.8 3.2 1 23 492 514 492 514 0.97

16 18 1e-05 0.0012 20.2 1.5 1 23 520 543 520 543 0.95

17 18 8.5e-06 0.00098 20.5 3.8 1 23 549 571 549 571 0.96

18 18 1.3e-05 0.0015 19.9 0.4 1 23 577 600 577 600 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.018	2	10.0	1.1	1	23	25	47	25	47	0.97
2	18	5.1e-05	0.0059	18.0	1.3	5	23	62	80	59	80	0.93
3	18	3.4	4e+02	2.8	3.2	1	20	86	105	86	108	0.93
4	18	0.00021	0.024	16.1	1.4	1	23	113	135	113	135	0.98
5	18	2e-05	0.0024	19.3	1.6	1	23	141	163	141	163	0.98
6	18	1.7e-06	0.0002	22.7	0.3	1	23	169	191	169	191	0.95
7	18	1.9e-06	0.00022	22.5	0.7	1	23	197	219	197	219	0.97
8	18	0.0087	1	11.0	6.9	1	23	225	248	225	248	0.96
9	18	8.8e-07	0.0001	23.6	2.0	1	23	254	276	254	276	0.97
10	18	4e-05	0.0046	18.4	0.3	3	23	342	362	341	362	0.98
11	18	7.8e-05	0.009	17.5	0.7	1	23	370	392	370	392	0.98
12	18	8.6e-05	0.0099	17.3	0.6	1	19	410	428	410	432	0.94
13	18	1.5e-05	0.0017	19.7	2.1	1	23	438	460	438	460	0.98
14	18	2.4e-05	0.0028	19.0	0.4	1	23	464	486	464	486	0.95
15	18	6.9e-06	0.00079	20.8	3.2	1	23	492	514	492	514	0.97
16	18	1e-05	0.0012	20.2	1.5	1	23	520	543	520	543	0.95
17	18	8.5e-06	0.00098	20.5	3.8	1	23	549	571	549	571	0.96
18	18	1.3e-05	0.0015	19.9	0.4	1	23	577	600	577	600	0.98

Sequence Information

Coding Sequence: ATGAAAAACCATCAAAGGACTGATATACTTGCCGCAAAATCGGATACCCTGCAAGCTACAGAAAACCACTTATTTGAGTGCGAAAAATGTGAATACAATTCGAAAGACAAGCTGTCTTTTCAGAACCACGTGGAAAGCCATTTGACTGAATATGAGGGCGGAAAAAAGAAAAACTACTGTATTGAGTGCGATAGGAGTTTTACTCAGAGTTTCAACTACAAAATACACATGAGAAATCACAAGGGAGAAAAGGTATTCAACTGTGAGAAGTGTCGAAGAAAATACTTGACTGAGAAAGCCCTTGCAAAACATCTCAGCTGTCATATTGCGGATGTATTTACATGTGAGATATGTGGGAAAACCTACAAAATGAAGGACAGTCTGGACTTCCACTTGAAAACTCATTCGGATACTAGTCCGTTCGAATGTAAGGAATGCGGGAAGACTTTCAAAATCATGGGCTACTACAATCAACATATGAAGAATCACCAAGCGATAAAAGACTTTTTGTGCTCTGTATGTGGAAAAGAATTCACAAAAGCACAACTTCTCAATATACACATGAGGGTTCATAGTGGGGAGAAGCCTTACGCTTGCAAAGTGTGCGGAAAAAGATTTACGCAAAGCAGTGCACTCAGTTTACATTCCAGAAATCATACAGGAGAGAGGAAATTTCGATGCTCGATTTGCAGTCAAGCATTTTTCCAGCATCATCACCTACAAGATCACGTAAAATTGAAACATACGAAGGAAAAATCGCACGAATGCAAGTACTGTGAGAAAGCTTTCACTCTGAAGAGCTCCCTGAACCGCCATATAATGATTCATAGTGACATTCTCGGAGGTGACCTGATGACTCATCTTGAAATACACCAAGAAATAGAATCTGTCAATTATTCAGAAGAATCGCCACTATCTCCAGAATACCAAGAAACAATTGTGCTTGAAGTGCACAGTGATGAAAGCTCTTTAGACGAAACATCACCACCAACTGTAGAAGAATCGAATAATGACATTCCCTTATGCTCTATATGTGGAAAGACTTTCGGAAACGAAAGATCTCTGAAGATTCACGAGAAAGTTCACGAAAAAGGAACCCATAAAAGATTTGTGTGTTCCTTTTGTGGGGAGGGATTTAGCAGTAATATCAGCTACAAGCTCCATTTGAAATCTCACAAATCTAGCTCAGAAAAAACTAACCATAGTATCGACGACGAAAAAAAATTCCACGTTTGCCGGGTTTGTGGAAAGAAGTTTCCTAGTAGGGCAAATTTACTAAGACATTTCCCCATACATTCAGATGAGTTACCGTATAAATGCGACAAGTGTGATAAGTCATTCAAAGTGAGGGTATACTACAAAAACCATCTCGCTAGCCACAGCAGAAAATTTCTGTGTACAGTGTGCGGTAGATATTTCGCCAGGAAATCATTATTGGATATCCATACGAGGGTGCACACTGGTGAAAAACCCTATGCGTGTGAGATGTGTGAGAAAAAATTCTCGCAACACTCCAGTCTTGTGAAGCACATGAAGTTTCATACCGGTGAAAGAACGTTCCCATGTTCGATGTGTGAAAAAGCTTTCAAGCAGTCACAGCATTTGAAGGCTCACGTCATGCTGAAACATACTAAAGAAAAACCGCATGCGTGTACTTTTTGCGGGAAGTGTTTTACCATGCCTAGTACCATGAGGATCCATATGAGAATACATACCGGGGAAAAACCGTATTCTTGCTCAATTTGTGGGGATCAATTTTCAGATTCTAGTGCTATGAGGAGACATCAGAGGATACAGCATCAGCCTGATTGA
Protein Sequence: MKNHQRTDILAAKSDTLQATENHLFECEKCEYNSKDKLSFQNHVESHLTEYEGGKKKNYCIECDRSFTQSFNYKIHMRNHKGEKVFNCEKCRRKYLTEKALAKHLSCHIADVFTCEICGKTYKMKDSLDFHLKTHSDTSPFECKECGKTFKIMGYYNQHMKNHQAIKDFLCSVCGKEFTKAQLLNIHMRVHSGEKPYACKVCGKRFTQSSALSLHSRNHTGERKFRCSICSQAFFQHHHLQDHVKLKHTKEKSHECKYCEKAFTLKSSLNRHIMIHSDILGGDLMTHLEIHQEIESVNYSEESPLSPEYQETIVLEVHSDESSLDETSPPTVEESNNDIPLCSICGKTFGNERSLKIHEKVHEKGTHKRFVCSFCGEGFSSNISYKLHLKSHKSSSEKTNHSIDDEKKFHVCRVCGKKFPSRANLLRHFPIHSDELPYKCDKCDKSFKVRVYYKNHLASHSRKFLCTVCGRYFARKSLLDIHTRVHTGEKPYACEMCEKKFSQHSSLVKHMKFHTGERTFPCSMCEKAFKQSQHLKAHVMLKHTKEKPHACTFCGKCFTMPSTMRIHMRIHTGEKPYSCSICGDQFSDSSAMRRHQRIQHQPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -