Gqui015816.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- zag-1
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000312.1:254615-271591[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.07 8 8.2 0.3 1 23 183 205 183 205 0.97 2 23 4.4e-06 0.00051 21.4 2.6 1 23 211 233 211 233 0.97 3 23 0.00021 0.024 16.1 0.2 3 23 240 260 238 260 0.98 4 23 0.037 4.2 9.1 2.9 5 23 271 290 269 290 0.95 5 23 0.0016 0.18 13.3 0.8 1 23 295 317 295 317 0.95 6 23 6.4e-05 0.0074 17.7 0.4 1 23 322 345 322 345 0.96 7 23 0.033 3.8 9.2 11.3 1 23 350 372 350 372 0.97 8 23 5.7e-06 0.00065 21.0 0.5 1 23 397 419 397 419 0.92 9 23 4.2e-05 0.0048 18.3 5.6 1 23 423 445 423 445 0.98 10 23 0.00046 0.053 15.1 2.7 1 23 451 473 451 473 0.95 11 23 6.1e-06 0.0007 21.0 1.7 3 23 482 502 481 502 0.98 12 23 0.00063 0.072 14.6 0.6 2 23 508 529 507 529 0.96 13 23 1.2e-05 0.0014 20.0 1.9 1 23 534 556 534 556 0.99 14 23 1.6e-05 0.0019 19.6 3.0 1 23 598 620 598 620 0.97 15 23 0.016 1.8 10.2 1.0 2 23 626 645 625 645 0.95 16 23 0.0032 0.37 12.4 4.9 1 23 651 673 651 673 0.98 17 23 0.19 22 6.8 2.4 1 23 679 701 679 701 0.97 18 23 1.7e-05 0.0019 19.6 2.3 1 23 711 733 711 733 0.99 19 23 0.0089 1 11.0 0.4 1 22 739 760 739 760 0.95 20 23 0.00035 0.04 15.4 1.9 2 23 768 790 767 790 0.96 21 23 1.8e-05 0.0021 19.5 0.1 1 23 807 829 807 829 0.98 22 23 3.1e-06 0.00035 21.9 0.2 1 23 835 857 835 857 0.99 23 23 0.0006 0.069 14.7 3.9 1 23 863 886 863 886 0.97
Sequence Information
- Coding Sequence
- ATGGATTGGCGACCAAGTGATATCCACCATGTGGAATCGATAGATATTAAAGTTgaagatgaaataattaaaaatgaatatGATACAGAAGCATCCTCATTTCTCCCAGTTGAGTTGGAAGATGAAGGAGCAAAAGAATATGTGGAGGAAATCATCATTGAAGCTGAACAAGCAGAGGAATATCTGGAGGAAATCATAATTGAGGTCGTTGAAGATGAACTTCCCTCTGAAAAATTCCAAGTTGAGAATAAAGACATGTGGCTGCCTCAAGAGACAGAAATAGTTGACATCAAAGAAGAAGGATCTCCTGATATCAAGAATGAAGTTTGTGGCACGGATTTTCTGGGATTTACCACCCAAGATATCATCTACAAAGGGGAATGGGCTGGGGGTGACTCGATAGTTTGCTTGAAGAAAGAAGAGAGTGAGTTTGATAAACCCTTAGCAACAAATTCAAACATTAAGATTGAAACAGAAGAAATGAATTACCCAAACGAAGCCCTTCCTACCAACCTAAAAGAAAACAGGCCCGTAAAAGTCAAGCAGTTTTCCTGCCGAATTTGCCTTAAGAGTTTCCTTTGGCCTTACGAACTGAAGCAACACATTCAAGTTCACACAGGGGAAAAACCGCACATATGCAACATCTGCCAAAAAAGCTACAGTAGCAAGGCTTCTTTGTACAATCACTTGCGCACCCACTCCAAAAAGCCATTCGGTTGCAATGTGTGCCAAACAAGCTTTGCTAGGGTTAGTCAGCTCATCATTCATGAAAAAACCCATCAACAAGGCAAGATCGGGGAGTTTCAGTGCCAATGCGGGAAGGTTTTCTTCAGGCGGCACTACATCGTCAGACACCAGAGACAGATGCACAACAAGAGACGTTTTCAATGTGAGAGGTGTTACAAGGGTTTCGATACGAAATTTAATTTAGGATGGCATCAGGTTGAACATTCGGAAGGAGAATTTCAATGCCCTGAATGTGATGAGAGTTTCGAGTTACTCGAAGATTTGACAAAACACAGATTTAAATTGCACCCTTGTCAAGTATTCTGCTGTGTATATTGCTACAAGACCTTCCATCAGCGATGCTCTCTGCTACGCCACATGAAAAAGCACAGGTTACCCAAGGTAGCAATACGAACACGAAGGCGCAGAAAACAAGTTGAGAAATCACCTGTAAATGGCACCTTTCTATGCGAACAATGTGGAAAATCATTTTCAAGTAAATCGGCTTTGACTGAGCACAAGGCACTACACGATAAAAAGCATCAGTGCCACGTGTGTGGGAAGACGTACGCCTATAGCAATTCGCTGAGCCATCATCTGCGCATCCACTCGAATACGTTCTCATACTGCTGTGACCTCTGCGGCATGGAGTTCAAACAGAGGGACAGTCTCTATAGGCACAAACTGGATCATATAGATAGAGATAATGCCCTCTTGTGTGATTTGTGTGGGAAACGGTTTACTTCAAGAGCCAACTTCAGAACTCACAGAAGAATCCACAGGAAGGATCTGTTAGAATGCCGTTATTGCGGGAAGAAATTTGTCAAGAAGAATGTGTACTGGGAGCACATAATGCGTCACAAGGAGAGGCCATTCAAATGTACCGTGTGTTCTATGAGATTCATCAACGAGAAAAACCTGCAGAGTCACTTAAAAACTCACGACCAGAAGATCGGGTTGCTCGTCAAGGAGAAAAGTGGTCCAGATTCCAGTGCATCAGTTCCTTCCACCAACAACAAAGCCATGCAGTCTGTCAAAGAAGGAAACTTGGAAAACAATGCCCCTTACCGATGCTCTACCTGCGGCAAATCATTTGCTTTTAAGAGTTTCCTGCAAAACCACGAAAGATTCCACTTGAAAGGTGCCCTCGAATGCCCTATATGTCACAAGATCGTCAAATCGAAGCTGGACAGACACATGCGAATCCACTCCGACGAGAAGCCCCACGAGTGTCCCATCTGCCACAAACGCTTCCGTTTGAGGACGATTCTGTATAGACACCAGATGACTCATTCCATGGATGCCCCTTTCACCTGCTCGGTGTGTGCGAAGGGTTTCTTTTCGAGCAGGGCGTTGGCCTGTCATCGGAAGAGTCACGTCACCACCGAGGACGGCCCCAAGCCGTTCCGGTGCGAAGTTTGTGACCAGAGGTTCTGTTACATGTCGATGCTGGAAGCGCATCAACGGATGCACACTGGCGAGAGGCCGTTCCAGTGCGACATCTGCAAGAATTCGTTCCGGATCGGAGCTCTGTTGACGAAACACCAGAAGAAATACGGAGGAAAAAAGCCTTTGACCTGCTCCGAGTGCCCCAGTGTGTTCTGCACTAAGAAGGACCTCCGCATCCACAAAATGACCGACCATAATATCCATACTACCAAGTCCTCCAAACCTCGCAGTAAAAAGAAACCCTTTGAGTGCTCCATGTGCGATAAAGCCTTCCGCGCCCCGTACCTCTTGACAATCCACGAAAGAGTTCACACGGGGGAACGTCCCTACCAGTGCAGCATGTGTCCCCAAGCTTTCACTGCGAAAGGCAGCCTCAACAAGCATATGATGATACACACTGGAGAGCGCCCGTTCCAGTGCCAATTCTGTTCGAAAAGCTTCCAGAGGAGCCCCCATCTGAAAGGGCATATCCAGAACAAGCATAGCGGGGACAGGAAGAGGAAGGGTAGTGAGAAAGCGAAGCAGGTTGTTATTAAGGTGTATAGGATGAAAAAGGTTTAG
- Protein Sequence
- MDWRPSDIHHVESIDIKVEDEIIKNEYDTEASSFLPVELEDEGAKEYVEEIIIEAEQAEEYLEEIIIEVVEDELPSEKFQVENKDMWLPQETEIVDIKEEGSPDIKNEVCGTDFLGFTTQDIIYKGEWAGGDSIVCLKKEESEFDKPLATNSNIKIETEEMNYPNEALPTNLKENRPVKVKQFSCRICLKSFLWPYELKQHIQVHTGEKPHICNICQKSYSSKASLYNHLRTHSKKPFGCNVCQTSFARVSQLIIHEKTHQQGKIGEFQCQCGKVFFRRHYIVRHQRQMHNKRRFQCERCYKGFDTKFNLGWHQVEHSEGEFQCPECDESFELLEDLTKHRFKLHPCQVFCCVYCYKTFHQRCSLLRHMKKHRLPKVAIRTRRRRKQVEKSPVNGTFLCEQCGKSFSSKSALTEHKALHDKKHQCHVCGKTYAYSNSLSHHLRIHSNTFSYCCDLCGMEFKQRDSLYRHKLDHIDRDNALLCDLCGKRFTSRANFRTHRRIHRKDLLECRYCGKKFVKKNVYWEHIMRHKERPFKCTVCSMRFINEKNLQSHLKTHDQKIGLLVKEKSGPDSSASVPSTNNKAMQSVKEGNLENNAPYRCSTCGKSFAFKSFLQNHERFHLKGALECPICHKIVKSKLDRHMRIHSDEKPHECPICHKRFRLRTILYRHQMTHSMDAPFTCSVCAKGFFSSRALACHRKSHVTTEDGPKPFRCEVCDQRFCYMSMLEAHQRMHTGERPFQCDICKNSFRIGALLTKHQKKYGGKKPLTCSECPSVFCTKKDLRIHKMTDHNIHTTKSSKPRSKKKPFECSMCDKAFRAPYLLTIHERVHTGERPYQCSMCPQAFTAKGSLNKHMMIHTGERPFQCQFCSKSFQRSPHLKGHIQNKHSGDRKRKGSEKAKQVVIKVYRMKKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -