Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010000143.1:472514-494200[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00046 0.053 15.1 0.1 2 23 42 63 41 63 0.96

2 26 0.003 0.34 12.5 0.2 1 23 68 91 68 91 0.95

3 26 1.1e-05 0.0013 20.1 0.2 2 23 102 124 101 124 0.92

4 26 1.8e-05 0.0021 19.5 1.0 1 23 136 159 136 159 0.98

5 26 0.068 7.8 8.2 9.0 1 23 164 186 164 186 0.97

6 26 0.034 3.9 9.2 2.6 2 23 196 217 195 217 0.97

7 26 1.3e-06 0.00015 23.1 0.1 1 23 222 244 222 244 0.99

8 26 2.3e-06 0.00027 22.3 0.8 1 23 250 272 250 272 0.99

9 26 4.7e-06 0.00054 21.3 0.2 1 21 278 298 278 299 0.95

10 26 2.5e-07 2.9e-05 25.3 1.4 1 23 320 342 320 342 0.99

11 26 0.00037 0.042 15.3 4.3 1 23 347 370 347 370 0.92

12 26 0.78 90 4.9 3.9 2 23 377 399 374 399 0.86

13 26 0.00041 0.047 15.2 1.6 1 23 405 428 405 428 0.93

14 26 3.1e-05 0.0036 18.7 3.4 1 23 433 455 433 455 0.99

15 26 0.026 3 9.5 3.5 1 23 464 485 464 485 0.94

16 26 3.3e-06 0.00038 21.8 0.4 2 23 494 515 493 515 0.97

17 26 0.00018 0.021 16.3 1.3 2 23 526 547 525 547 0.97

18 26 0.007 0.81 11.3 3.1 2 23 553 575 552 575 0.96

19 26 0.0009 0.1 14.1 3.2 2 23 582 604 581 604 0.95

20 26 0.0011 0.13 13.8 2.9 1 23 610 633 610 633 0.95

21 26 6.4e-05 0.0074 17.7 0.4 2 23 639 660 638 660 0.97

22 26 0.037 4.2 9.0 6.9 1 23 669 691 669 691 0.97

23 26 4.1e-05 0.0047 18.4 1.0 1 23 698 720 698 720 0.97

24 26 0.00035 0.041 15.4 1.7 1 23 726 748 726 748 0.98

25 26 3.4e-06 0.00039 21.8 0.2 1 23 754 776 754 776 0.98

26 26 0.1 12 7.6 1.5 1 21 782 802 782 803 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00046	0.053	15.1	0.1	2	23	42	63	41	63	0.96
2	26	0.003	0.34	12.5	0.2	1	23	68	91	68	91	0.95
3	26	1.1e-05	0.0013	20.1	0.2	2	23	102	124	101	124	0.92
4	26	1.8e-05	0.0021	19.5	1.0	1	23	136	159	136	159	0.98
5	26	0.068	7.8	8.2	9.0	1	23	164	186	164	186	0.97
6	26	0.034	3.9	9.2	2.6	2	23	196	217	195	217	0.97
7	26	1.3e-06	0.00015	23.1	0.1	1	23	222	244	222	244	0.99
8	26	2.3e-06	0.00027	22.3	0.8	1	23	250	272	250	272	0.99
9	26	4.7e-06	0.00054	21.3	0.2	1	21	278	298	278	299	0.95
10	26	2.5e-07	2.9e-05	25.3	1.4	1	23	320	342	320	342	0.99
11	26	0.00037	0.042	15.3	4.3	1	23	347	370	347	370	0.92
12	26	0.78	90	4.9	3.9	2	23	377	399	374	399	0.86
13	26	0.00041	0.047	15.2	1.6	1	23	405	428	405	428	0.93
14	26	3.1e-05	0.0036	18.7	3.4	1	23	433	455	433	455	0.99
15	26	0.026	3	9.5	3.5	1	23	464	485	464	485	0.94
16	26	3.3e-06	0.00038	21.8	0.4	2	23	494	515	493	515	0.97
17	26	0.00018	0.021	16.3	1.3	2	23	526	547	525	547	0.97
18	26	0.007	0.81	11.3	3.1	2	23	553	575	552	575	0.96
19	26	0.0009	0.1	14.1	3.2	2	23	582	604	581	604	0.95
20	26	0.0011	0.13	13.8	2.9	1	23	610	633	610	633	0.95
21	26	6.4e-05	0.0074	17.7	0.4	2	23	639	660	638	660	0.97
22	26	0.037	4.2	9.0	6.9	1	23	669	691	669	691	0.97
23	26	4.1e-05	0.0047	18.4	1.0	1	23	698	720	698	720	0.97
24	26	0.00035	0.041	15.4	1.7	1	23	726	748	726	748	0.98
25	26	3.4e-06	0.00039	21.8	0.2	1	23	754	776	754	776	0.98
26	26	0.1	12	7.6	1.5	1	21	782	802	782	803	0.89

Sequence Information

Coding Sequence: ATGTCATCACCTTGTTTCAGAGACAGACTACCATTGCCTAGAATAACCGATTGTTGCCTCATTCCTTTATGGCAGAAATTTAGACTTTCAacgttattttcaattttcaggttGGACTCGCTGGAATGTGAAATTTGTGGAAAAGTGTTGGGCTCTCAAAAATCCTTGCAGGATCACAGCAAGATCCATTGTGGAAATAGATATGTATGCGATATATGCGGTAAAGACTTCTTATATCCATACAGGTTGCGGGCACATAAAGAAAGAATCCATCTGCACATTAAAAAGAAGTTACCCGAAGTTCAATGCGACATTTGCGGCAAAAGCTTCTCAGGAAAAACTCATCTTGCCATTCACATTGGAAACATTCACTTTGGAAAACTGACTGATGACACGAAACCAAAATTTCAATGCCCCATTTGTGATAAGACTTACATCTGCCAGTCCCAGCTTGATAAACACATAAGAATCATCCACGAAGGTTTCCGGCATGAATGTCCACATTGCGAAAAAAGTTTCAGGAACGATTGGCATTTCCAATGTCACGTGAAGACTCACCAGCCTGACTATCAAGGTTTCGAGAAGGAGTGCGAAAAATGCTGCACTGTTTTCAAGAGTGAAGGGGGTTACCGGGTACATATGAAGAAACATGAGGGGTTATCTTACGTGTGTGATATATGTGGTAAAAATGTGACGTCCGTGGGTAGTTTGCAAAAACATATTCGCACCCATACTGGCGAAAGGCCGTACAAATGCGAAGAATGTGGCAAGAATTTCAACTCCGCGCAATATCTGGTGACGCACAAACGCGTTCACACGAAAGAAAAACCATATGTTTGTGACATTTGCAACCAAAGCTTTACACAAAAATCATCTCTGACAGTACATGGCAGGTTGAAAGGAAAACCCGGCTTCGATTACTCCGCCGTTTTCCATTGCGAAGTGGACTACACGGAATACACCTGCGACTCGTGTCCCAAAACATTCGCTTCCCTGTCTAACTTACGGCGACACAGGAACACCCACAAGGCCAAACTATTCGCCTGCGATATGTGCGACAAGTCCTTCCACCAAAAATACAACTTGGAGTACCACAAGAACTTCAAACACTTCAGGAAGTTCACCTGCAAATGCTTCTATTGCGACCAGGTCTGTCTGAACAAGAACGGGCTGAAACTCCACATCGACAACGTCCATCTGAACAAGTACAAGTTCTGCTGCGATCAGTGCCCCAAGGGCTATAATTCCAGAAGCGAACTAGCGAAACACGTGCAGTTCGACCACGAGGGGATGAGGTACACGTGCCTGGTGTGCGAGAAGGAGTTCAAAGACAACAACCACTTCAAGCTGCACATCAAAACCCACGATCCGAACTACAGTAAGCCGGAGTTCAAGTGCGAGGTGTGCCACAAGGTGCTCTCCACGAAGTCTTACGATCGCCACATGAAGATGCATGCCGGAGACTCGGATAACAACGTCGTATGCGACATATGTGGCTTGGTAGTGTCGAGCAAAAGTCACCTCATCAACCACCGACGCACGCATACCGGAGAAAAACCATCTGATTGTTCCCTCGAATGCGTGCAATGCAAGAAAAAGTTCGACAGCCTGGGAAAATTAAGCAGACATTTGAAAACCCACAAAGAAAAAAACCTCACGTGTGACATGTGCCACAAAAAATTCAAGTGGCAGATGAGCCTCGACAACCACATGAAAAAGGACCATCTCAATCACTGCAATTGCCAGTGTGATATTTGTGATAAAAAATTCCTGCACAGCGCGCAATTGAAGAGTCACATAGAAAAAATACACATGCAAATTTGCAAGTACAACTGCGAGAAATGTGACAAAGGATTCAGATATCGTTTCGAATACGATAAGCACATTAAGTTTCAGCATGAAGGGTTGAGGTTGACCTGCCCACAGTGTAAGAAGGCATTCAAAGATGAACCCTATTTTAGGGAACATCTCAAAATCCACGATCCTAATTATGAAAAGGTAACGCATTCCTGTCCGTATTGCGAAAACGTCTATCATCACTACAACTCTTACACGAGACATATGAAAATCCACACTGGAGAGCAGAGAGAGCATATCTGTGATATTTGCGGAAAAATATTGTGTTCAGCGCCTAGTCTCAAGATGCATATAAGAACACATACCGGCGAAAAACCCCACAAATGCGACGTTTGTGGAAAAGGATTCGCGAACTCTGCTATATTGCACATACACAAAAGAACGCATACCAAAGAAAAACCCTATGTTTGTGTTGTTTGCCAGAAAGCTTTCACCCAAAAACCCGCTTTGAATATGCATATGAAATCTCATACCGGTGAAAGACCGCATGTTTGTATTGTTTGTACCAAAAGGTTCATCACAAAATATGTACTGAAAATTCACCAATGCTTAGGACCTCCaatattattgtga
Protein Sequence: MSSPCFRDRLPLPRITDCCLIPLWQKFRLSTLFSIFRLDSLECEICGKVLGSQKSLQDHSKIHCGNRYVCDICGKDFLYPYRLRAHKERIHLHIKKKLPEVQCDICGKSFSGKTHLAIHIGNIHFGKLTDDTKPKFQCPICDKTYICQSQLDKHIRIIHEGFRHECPHCEKSFRNDWHFQCHVKTHQPDYQGFEKECEKCCTVFKSEGGYRVHMKKHEGLSYVCDICGKNVTSVGSLQKHIRTHTGERPYKCEECGKNFNSAQYLVTHKRVHTKEKPYVCDICNQSFTQKSSLTVHGRLKGKPGFDYSAVFHCEVDYTEYTCDSCPKTFASLSNLRRHRNTHKAKLFACDMCDKSFHQKYNLEYHKNFKHFRKFTCKCFYCDQVCLNKNGLKLHIDNVHLNKYKFCCDQCPKGYNSRSELAKHVQFDHEGMRYTCLVCEKEFKDNNHFKLHIKTHDPNYSKPEFKCEVCHKVLSTKSYDRHMKMHAGDSDNNVVCDICGLVVSSKSHLINHRRTHTGEKPSDCSLECVQCKKKFDSLGKLSRHLKTHKEKNLTCDMCHKKFKWQMSLDNHMKKDHLNHCNCQCDICDKKFLHSAQLKSHIEKIHMQICKYNCEKCDKGFRYRFEYDKHIKFQHEGLRLTCPQCKKAFKDEPYFREHLKIHDPNYEKVTHSCPYCENVYHHYNSYTRHMKIHTGEQREHICDICGKILCSAPSLKMHIRTHTGEKPHKCDVCGKGFANSAILHIHKRTHTKEKPYVCVVCQKAFTQKPALNMHMKSHTGERPHVCIVCTKRFITKYVLKIHQCLGPPILL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -