Basic Information

Insect: Gonatopus flavifemur
Gene Symbol: -
Assembly: GCA_018340375.1
Location: Contig12:1903381-1911492[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.1 1.5e+02 3.4 1.0 1 21 310 330 310 331 0.91

2 12 0.00047 0.065 14.0 2.6 1 21 336 356 336 357 0.95

3 12 0.0084 1.2 10.1 5.7 1 21 384 404 384 405 0.95

4 12 0.011 1.6 9.7 1.0 1 21 417 437 417 438 0.96

5 12 0.0098 1.4 9.9 0.6 1 21 459 479 459 480 0.93

6 12 0.26 37 5.4 0.3 2 13 487 498 487 505 0.88

7 12 0.37 51 4.9 0.3 1 21 530 550 530 551 0.89

8 12 0.00031 0.043 14.6 1.6 1 21 569 589 569 590 0.96

9 12 8.6 1.2e+03 0.6 0.1 2 7 597 602 596 612 0.88

10 12 0.0057 0.79 10.6 1.3 1 22 687 708 687 708 0.96

11 12 0.00016 0.022 15.6 1.0 1 21 719 739 719 740 0.95

12 12 0.00058 0.08 13.8 0.1 2 20 747 765 746 767 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.1	1.5e+02	3.4	1.0	1	21	310	330	310	331	0.91
2	12	0.00047	0.065	14.0	2.6	1	21	336	356	336	357	0.95
3	12	0.0084	1.2	10.1	5.7	1	21	384	404	384	405	0.95
4	12	0.011	1.6	9.7	1.0	1	21	417	437	417	438	0.96
5	12	0.0098	1.4	9.9	0.6	1	21	459	479	459	480	0.93
6	12	0.26	37	5.4	0.3	2	13	487	498	487	505	0.88
7	12	0.37	51	4.9	0.3	1	21	530	550	530	551	0.89
8	12	0.00031	0.043	14.6	1.6	1	21	569	589	569	590	0.96
9	12	8.6	1.2e+03	0.6	0.1	2	7	597	602	596	612	0.88
10	12	0.0057	0.79	10.6	1.3	1	22	687	708	687	708	0.96
11	12	0.00016	0.022	15.6	1.0	1	21	719	739	719	740	0.95
12	12	0.00058	0.08	13.8	0.1	2	20	747	765	746	767	0.92

Sequence Information

Coding Sequence: ATGGATTTGGAGAAGTTGGACATGAATTCTGAATATGATCTGCATATGTTAAACGTTATGGGTTTGATTCCAACGAATCAAATGGTTGTCATGATCCGAGATGAAAACAATCGAACTTCCATTGGTTACGTGTTCGACAGTGACGATAAAGATTTGATTCAACAATCTCTAGGGATATCTACATTCGAACAATCGTCTGACTTCATTGTGATCAATGGAGAAGGTGAAGGGTGTTATATCAATAACTCAGAAATACAAGATCTCCCATATCAAACAATAAAAACTGAGATTTTTGATACAAATATGGAGATAGACTCTGAAAATATAATACAAGGGCATTCAGGGGCAGAGGTGAATGACCAAAATGAGGAATTCAATATGCATGAGGAATATAAAAAGGAAATCATAGAAGACATGATTGAAATTGATGACAAATTCACGTTACGTCAGGTGTTGAATTTGAATAATGATAACAATAATAATACTAGTCAGGATGGTGAAAATGAAGACACAATTACCAAAACTTTGAAAAATGATGCTACGATTCCAGACAGTGATGCAATATCCAAAGAACAGGAATCTCCTTTAAATGCTCCGGATTTGAAAAGTAAATATTGTGGCAAAAGTATGAATGAAACTACCGAAAGAACATCTTCTCGACATCATAACGGTAGTTGTCTGAATCCAAAGAAAAGAAAGAGAAAGTGTAAAGAAAATGAAAATCGCAGTGCAAAACATCTTAAAAGTAGCATTCCATCCGATGATTCCGGTAACGAACGAATACTAATGGATCATAACAAACGTGTGACTTGCAAGTATTGCAGACTTGAAATGAATAAAACTAAAGTACCTTTGGAGCATTACAAAGAATGTAAAGGTTTACAGGAGAAGAAGAAATCTGAAGTGGAAATGAAACAATCTGCGATATTCAAATGCATCAATTGCGCTAAGCGATACGATAAAAAGATAGATTTAATGCATCATTCGAAAATGTGCAATTTACGGTTTCATTGTAACGAGTGCAATACTTCGTACTATAATAAAAATTCTTTGATTCATCATATACAGAACGAATGTGGAGATGTCAAGCCTCTGAAAGATGAAAAGAAAACCTCGATGCTTGTTAATAAAGCGAAAAACAATACTTCCTACACATGTACTCGCTGTGATAGATTTTGTCACACAAAATCAGGTTTGACGAAACATACGAAATCATGCAAAGTCGAAGAAAATAAGAAAACTGACAAATTCGTGTGTTCCTATTGCACAACGGAATACAATCGAATGGTGGATGTGAAAAATCACATGAAACACTGGTGTGCCAACAATCCGGACTCCACCAAAAGAAAACGTGGAGCCGAACAGGGAAAAACTCACGTTTGCGCCGACTGTGGCTGCATTTTTACCAAAGAAATATCTTTACTCACTCATAGAATAAAAGGTTGCAAGCAACACGCGACTTGCAATTACTGCGGAACGGAATTCCGTGAGAAGAGAGTGCCTTCCAGGCATTATCAATTATACTGTAAAGGTTTGAACATAAATCGTGATGATACAATAACGATGATGAGTAGCAAAGGGAAAACATTTCTTTGTCAATTTTGTAATAAAGCTTATCTAAGAAAAATGGATCTGGGTAAGCACGTTATGAGCAATTGCCCAAAGAATCCTGATTCCAAGGAAAGTAAAAAACCGGGAGCTTCGTATCAGTGCTTCGATTGCGGAGTCAAGTTTACGATATTTCAGAATTTGAAACGCCACAGAAAAAGAGTATGTAAAAAAATCAGTAGATGTAAAGATTGTGGCGTGGAACTGGAAAATGGGAAAATGATTGTTGAACATTCAAAGGATTGCAAGTATTTGAACGAGTCTGTAAGAGATGATGATATCAAACTTGCTGATTCAGCGTCTTTGTCGGCGTCCTTGTCGTCTTCGTCGTCATCGGAGGCTGATAAAACTACTGACACGGTGGAGGAAAAATCTAATCTCAGTGAGGATAATAATACCGAGGTTTCTTCGCCCCAAAAAAAAATTATCACTGACAAATTAACAACAAAATTTACATGTACCTTCTGCAATAATCGGTACAACCGTTATGGTTTTCTTATTAAACATTTGAGAGTATGTGCAAAAGATCCAAACCATACAAAAAAATTCACCTGCGACAAGTGCGGAAAAATGTTTTTCGAAAAAGATCATTTAGATCTTCATGTTCGAAATAATTGCAAACCTTTGATCAGTTGTTCCATCTGCGGGAAAGAATTCAGAACCAAACAAGCTATCCGGGATCATAGATTGTATTGCAAACTGTCCAAGTAG
Protein Sequence: MDLEKLDMNSEYDLHMLNVMGLIPTNQMVVMIRDENNRTSIGYVFDSDDKDLIQQSLGISTFEQSSDFIVINGEGEGCYINNSEIQDLPYQTIKTEIFDTNMEIDSENIIQGHSGAEVNDQNEEFNMHEEYKKEIIEDMIEIDDKFTLRQVLNLNNDNNNNTSQDGENEDTITKTLKNDATIPDSDAISKEQESPLNAPDLKSKYCGKSMNETTERTSSRHHNGSCLNPKKRKRKCKENENRSAKHLKSSIPSDDSGNERILMDHNKRVTCKYCRLEMNKTKVPLEHYKECKGLQEKKKSEVEMKQSAIFKCINCAKRYDKKIDLMHHSKMCNLRFHCNECNTSYYNKNSLIHHIQNECGDVKPLKDEKKTSMLVNKAKNNTSYTCTRCDRFCHTKSGLTKHTKSCKVEENKKTDKFVCSYCTTEYNRMVDVKNHMKHWCANNPDSTKRKRGAEQGKTHVCADCGCIFTKEISLLTHRIKGCKQHATCNYCGTEFREKRVPSRHYQLYCKGLNINRDDTITMMSSKGKTFLCQFCNKAYLRKMDLGKHVMSNCPKNPDSKESKKPGASYQCFDCGVKFTIFQNLKRHRKRVCKKISRCKDCGVELENGKMIVEHSKDCKYLNESVRDDDIKLADSASLSASLSSSSSSEADKTTDTVEEKSNLSEDNNTEVSSPQKKIITDKLTTKFTCTFCNNRYNRYGFLIKHLRVCAKDPNHTKKFTCDKCGKMFFEKDHLDLHVRNNCKPLISCSICGKEFRTKQAIRDHRLYCKLSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -