Basic Information

Insect: Gonatopus flavifemur
Gene Symbol: ush
Assembly: GCA_018340375.1
Location: Contig6:32611081-32618616[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0041 0.56 11.1 0.0 3 20 288 305 286 307 0.92

2 7 3e-05 0.0041 17.8 1.3 1 23 337 359 337 359 0.98

3 7 0.068 9.5 7.2 1.6 3 20 411 428 410 430 0.93

4 7 0.01 1.4 9.8 4.4 2 21 694 713 693 714 0.94

5 7 0.039 5.4 8.0 0.0 3 20 742 759 740 761 0.91

6 7 0.012 1.6 9.7 0.0 2 23 800 821 799 821 0.95

7 7 0.0063 0.87 10.5 1.4 1 23 827 849 827 849 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0041	0.56	11.1	0.0	3	20	288	305	286	307	0.92
2	7	3e-05	0.0041	17.8	1.3	1	23	337	359	337	359	0.98
3	7	0.068	9.5	7.2	1.6	3	20	411	428	410	430	0.93
4	7	0.01	1.4	9.8	4.4	2	21	694	713	693	714	0.94
5	7	0.039	5.4	8.0	0.0	3	20	742	759	740	761	0.91
6	7	0.012	1.6	9.7	0.0	2	23	800	821	799	821	0.95
7	7	0.0063	0.87	10.5	1.4	1	23	827	849	827	849	0.99

Sequence Information

Coding Sequence: ATGATGACTACGACTAAGACTACAGCTACAACTACAACTACAACTACAACCGATACGATAAGACGCGAAGGAGAAGATGAGGAGTGGAGTGATTCAGAGAAAACTCCATCGGTAAGTAGCGGTATCGAAGGTGGTGGATCTGCGGTTTCCAGTCCCGTGGCACCCAACGCGGAAGATGATTCTAGTTTGCCATTATCTACAAGACTCAATCCTGCTTCTTCGTCGTCTTCCTCCTCGTCCACCGTAGTCCCTAAATCCAACGCCGAAGATATTAGGTTACGTTTGAGCGTACTCTCCGAGGACGCTCGTAAACGACTTACCAGCCTCACCGAGGACAGCGAGGTCGTGAGAACGGCGAGAGATCGCAATGCTTCGTCGAGGACGAATCAAATCCGAGAGGTCAGTCCGAAAGAAGGGGATGAGGATTTATCTTCGTCCGTAGTCAAAGAGGGAGAGAATCAATCGAAATCGTCTACAACGACGCGTAGGAGAAACTCGGTTTGCAAGAGGGATTCCGAGGATGCCTCATGGAGATCGACTTCGGAAGACCCATCGCCCGATATTAAAAGAATGCGCCTGGACGACGAGACCGCTGTTGTTGCAAGCGGTGCCGTTAGCGCTCCAAGACTGAGATTGAATACTAGTCTAGCGACGGATCCTGCTCTAAAACCCGCCGCTGCTGTGGCCAATTTAACTATCAAACCCGATAACAATTCACCCCCAAATTCTGGACCACCTCTGCCAACTGGATTACAAAATGCAATTGCATCGGGGAGATTATACGTTTTACCCACAGATGGTAAAGAAACGATAACGGTGGAGCCTGTGGGCACGGCGACCCCCCGACCGACTCCTCTGATTTGTCCGCCTTGTGGTATACGATTTAGCTCGGCAAGCACGTTGGAAGCGCATCGTACGTTTTACTGCGCCCATCGTCCTCGTCTCGAAGAGGAATCGACGAACGACGAAGACGAAGAAAAATCAGGAAAATACGAAGTGCGAAAAGCTTACGCGTGTCCACATTGTTCTTACAGCGCTGACAAGAAGGTGTCCCTCAATCGACATATGAGGATGCACGCCGCATCGCCGGCGACCCCCACAGTCACGACGATACCAACCGTAGCCGCGATCGCTCCTCCAACGTCGACTACGACCCCGATCAACGTAGTTGGAGGTACAGCGCCAAACGCGTCGAATGGATCCGCTTTGAACGAGGAAGCCGAAAGATATTGTCGTAACTGTGACATAAGATTTAGTTCTCTAAAGACTTATCGAGCTCATAAGACTCATTATTGTAGTACGAGGCATGTGGTTAAAGATCACGCTCCTCCTATTCCCCCGGTAACCACTTCAACGCCTACGACAAGCCACGCGTCTACGGGTTCGAAAGCTTCTCCCCCGACGAGTTCGAGTCCCGGTGATTCTCCTCCTCCGCCTCAAAGTCAACCGTGCTTAGCTCTGCCGACCAATCCCATTCTCATCGTTCCGTATTCGCTCTTCCGGGGTGCCAGCGTCCTCGCAGCCCCGGCTCTCCCAGCTCCGGATACCGCCTGTTTTCTTCTTCCGAATGGTTCTCTTCAACCGATGACCAGAGGATTAACGAGCGCAGCTGTGGCGGCCGCTGCCGCGGCTGCAACGCAAAACAACGTTCAAGATATACCTTCCGCCGTTCTGAGAGCGGCCAACAAACCCGCGACGACAACGCCAAACTCCTCGTCAGCGACGTCCGTTTGTATGGCCGCTACCGCTTCCTGTGCCGTGTCTTCCACTTCACCGTCGCCCTCTGCCTCCGGTCCTTTGGATCTTAGCGTGAGAAGATCTCCGGGTCATCAGGATGAAAAGGAGAACAGAATGTCTCCGATCACGGCTTCGTCTCTTCCCCCCTTGCCACCAAGTAGTCCTAGGTCCAGAGGTAGCGCCAGCCCGAGGACGCGATCTTCCATCGCCACCACGCAAGCGGGATCGGGGTCCGCTCCACCTCCTCCGCCGCCTCATCCACCCTCGACGGAACTCGCTTTACGTTTAACCGAATTACCCCCGCCCCCCGTGCCTGGGGTACTCGTCAAACAAGGAGTCTCCAGATGTAAAGAATGCAACATCGTATTTTGTCGGCATGAAAATTTCGTTGCTCATAAAAAACATTATTGCCAAGCTAGAGAAACGACGGTGAGCAACAGTCCACCTCCAGCCGGTACACCCTCGCCCCCTTTAGTACAATTAATTTGCGCGGCATGTGGTATCAAATTCGCTTCCATGGACAATTTAGCGGCTCATCAAGCGTTTTACTGTACCAAAAGGCCGGAACCTCCCGAACATCATTCCCGTTGTTCCAAATGCAAGGGAATAATCGAGCCGGGTAGCACGCATACTTGTACGAGCGCGCCAACCGGAGGGTGGAGATGTCCAGTTTGCGGAGCGGTTAGTCCAACCGCTGGAGCAGCGCAACGTCACATGGACGCCCATCAAGGTGTCAAAGCGTTTAGATGTACGATTTGTCGTTATAAGGGAAATACTTTGCGTGGTATGAGAACGCATATTAGAATGCATTTTGAGAAACGCGGTACAGATTTTCAAGAAGAAAATTATATAATGTGCATTCTTGACGACGAAATTGTTTTGCCAGCCCCCGAGCCCGCGCCTGCCACCACCCCTGAGGAAATTCCTCCGGAAACTCAAATCAATGGCAAAACTGAAAAAACTGAAGTGGGAAAGAGTCCCCAACCGTCAGTTCCATCTCCTTCTTTACCAACCTCCACAACGACGAACAAGATTAAACAAGAACGCGAAGACACACCTTCTCCGGACGAAAGCCTCGACCCAAACAAATCACGCTGGGGAGGCGAGCAACAACAATAA
Protein Sequence: MMTTTKTTATTTTTTTTDTIRREGEDEEWSDSEKTPSVSSGIEGGGSAVSSPVAPNAEDDSSLPLSTRLNPASSSSSSSSTVVPKSNAEDIRLRLSVLSEDARKRLTSLTEDSEVVRTARDRNASSRTNQIREVSPKEGDEDLSSSVVKEGENQSKSSTTTRRRNSVCKRDSEDASWRSTSEDPSPDIKRMRLDDETAVVASGAVSAPRLRLNTSLATDPALKPAAAVANLTIKPDNNSPPNSGPPLPTGLQNAIASGRLYVLPTDGKETITVEPVGTATPRPTPLICPPCGIRFSSASTLEAHRTFYCAHRPRLEEESTNDEDEEKSGKYEVRKAYACPHCSYSADKKVSLNRHMRMHAASPATPTVTTIPTVAAIAPPTSTTTPINVVGGTAPNASNGSALNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDHAPPIPPVTTSTPTTSHASTGSKASPPTSSSPGDSPPPPQSQPCLALPTNPILIVPYSLFRGASVLAAPALPAPDTACFLLPNGSLQPMTRGLTSAAVAAAAAAATQNNVQDIPSAVLRAANKPATTTPNSSSATSVCMAATASCAVSSTSPSPSASGPLDLSVRRSPGHQDEKENRMSPITASSLPPLPPSSPRSRGSASPRTRSSIATTQAGSGSAPPPPPPHPPSTELALRLTELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETTVSNSPPPAGTPSPPLVQLICAACGIKFASMDNLAAHQAFYCTKRPEPPEHHSRCSKCKGIIEPGSTHTCTSAPTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDFQEENYIMCILDDEIVLPAPEPAPATTPEEIPPETQINGKTEKTEVGKSPQPSVPSPSLPTSTTTNKIKQEREDTPSPDESLDPNKSRWGGEQQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -