Gfla017849.1
Basic Information
- Insect
- Gonatopus flavifemur
- Gene Symbol
- Prdm15
- Assembly
- GCA_018340375.1
- Location
- Contig8:21977153-21983719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.67 93 4.1 0.1 2 23 238 259 237 259 0.94 2 13 9.1e-05 0.013 16.3 0.7 2 23 267 289 266 289 0.95 3 13 2.8e-05 0.0038 17.9 0.9 3 23 399 419 397 419 0.97 4 13 0.0052 0.73 10.8 0.5 1 20 423 442 423 444 0.94 5 13 0.009 1.3 10.0 5.2 1 23 454 476 454 476 0.98 6 13 0.00026 0.035 14.9 7.7 1 23 511 533 511 533 0.97 7 13 1.1e-05 0.0015 19.2 0.5 3 23 556 576 554 576 0.97 8 13 0.0047 0.65 10.9 1.4 1 23 581 603 581 603 0.96 9 13 0.00025 0.034 14.9 0.1 2 23 609 630 608 630 0.96 10 13 0.00022 0.03 15.1 6.5 1 23 635 658 635 658 0.96 11 13 0.039 5.3 8.0 3.9 2 20 665 683 664 686 0.93 12 13 0.0011 0.15 12.9 9.3 1 23 692 715 692 715 0.96 13 13 0.27 37 5.4 8.1 1 23 720 743 720 743 0.95
Sequence Information
- Coding Sequence
- ATGTTGAATGTACAATTATCTCATAATATAGGAGAAAATATATGTATTAATGTTTCTAGTTCAGTGTGCAATATCTGTGCTCAGAACCACGATCTTCACGATTGTCCAATTCTGTTGGGATCACGCTATATCCCGGATGAGCCTCTGATATCACGTGCAGTGCAAACTCTTCCTAAAACTTTGGAAATCGCTCGTATGACGGATGGCTCTACCAAAGTCATAACAAAAACAAATATCGAACAGGGTACAACATTTGGACCATTTTACGCCAAAAGACTTTCTACTATGCATCCCTCTTCAAATTTCCCTATCAAAGTGTTTGGTACTTCCCCATCGGACACTTATTATTTGGATTATTCGGATGAGAATGAATCTAATTGGATGCGCTTCATAGCTCCAGCTTGCAACGCCGTAGAACAAAATCTCACTTGCTATCAAATGAAGCAAGATATATTTTATACCGCAACTCGTACAATTTCCGTTGGCGAAGAACTAAAAGTATGGTATGCTCCTTATTACGCATTGCAAATGAAAATGCCATTGGATAATAACTCTCCCAACAAATCCATAGCCCCTCGAATAGAAAAAGAGAGTATAAAGACTTCGAGTCATAAGGAACAAATAGCTTTACTAAATAAAGATAGTGCTCAAGAGTTAGCAGAGACGTTGCCAGCTCAACGACTGGGAGCTAGACAAAACAAGGAAACTTGGAATTGTAAATTGTGTTCAACTGTCATCAATTCGGTTGTTTCTTACGCCAAACATCTTATGGAGCATTATAAATTATTATTAGGTGTAGTCTGTAATATATGTGATAAAAAATTTCACAACCCTGCAGTATTAGAAAGACATAAAAGAGCAAAACATTCAAATTTAACTGATCGGAATGACAGTGGTAATCAGGATCAAAGTTCTCAGGGTATATTTTTGAATCTGAATGAGCATTTAGAAGCATTGGATAAATTCAGTTCGGATAAAAATGATACGATAGAACAGGATCTATTAAAAGCTTGCTCTCCGTCAAAAGAGATAAATTCGGATCTCCCACTTTTGGATACAAATTCGATAAACGTTAACGATTTATTACACAACATTTGTTCTATCAATGGAAATGATCCAGTCGAAGACTTATCCTCAGAATTTTTGAATATTGTATCGGATGAGAATAACGAAACTTCTACAGTGAATTTAGATTGCGATATTTGTGAAAAAAAGTTTGATAAATTGGATTATTTGTATCGTCATTTGAGAAAACACACTGGAGAATTCATTTGTCCATCATGTTTAATTGTTTTTGCGAGGAAGGAAAATTTACTTTCCCACACCTGTTTCGCTCAAAAAGCGTTAAAAGAGAATCTGTTTGAATGCTCGGTTTGCTGTAAATCTTTTTTACAAAAGAAATATTTGAAAAGACACATGATCAAGCATACAGAAATATACTTTCTTACAGAGTCTAATTGTTGCAAATGGTGTCATCGTGAATTTACAACACGATCCGAATGCGATTTGCATAAATGTTCCGCGCCAAATCACGTTTGTTTACAATGTAGAAAAAGATTTGTCCACAAAGCTCACTTGAATCGTCATTTGAAGTCCCACAGTGAACCAAAACCAAGATTAAAAACAAGAATCAAAAGAAAAAAATCCGAGGACAAACCTGTGATTTGTGAAAAATGTGGAGATGTATTTAAAAATTCTTATACTCTCAGGCAGCACATGAATTCGCATGGAGAGAGAATGTTCGAGTGTGAAATTTGTAATAGAAAATTTCATCGAATAGGAGTATTGAAGGAACATAAAACTATTCATCAAAGTGCTCAAGTTCCTTGCGATGTTTGCGGGAAAAAATTGAAAAGCAAAAAAGCATTAGATATTCACATGCTTCTTCACGGAAGTAAAAAGTTTCAATGTGAAAAATGTGATAAGAGCTTTTTTCAAAAATGCAATTACCTCAAACATTATAAACAAATACACGGTGAAAGAATAGTATGGAATTGTCCACATTGTTCATCCCAATTCACTAATAAATCAGGATACAACAAACATGTTGAATGCCATTTAGAGCCCACGCAACATTGTTGTACATTGTGTTCTAAATCATTCCACAGAGAATATCAACTCAAACGACATTTGCAAACCAGTCACAGCAATATTGTATATCGCTGCCCATTTTGTCACATGACTGCTCGCCATAGGCATAGCATGAGGCGACACTTCGAGCGTCAACACAATAATCTTAAGAGTGATTGGGATAAACCGAATTTTGTTAAAACGTTAATCGAGAAGATTGAAGATCAGAAGAAATTATGCGATGTTACGGAAAATATTCCTACGGATGTGCAACCACTCGATGAATTCCAAGGGATCAATGAGGATCACATCTTTCAAAAAGTGCAAGTAGAAACTTTTCATTCGACCAATGACGGAACTCTTTTGGATTGTCCTGAAGGAAATACTGATCTGTGTCAGTTGGATACAGTACCACCACTGAGTATGAATGAACCGAGTCAAGAATTAACGGAATCCGTGTTAAGAAACGCTTATATATTTGATGAACACAACGGAGAAATAATGTTTTATGTATTGGATAATTCTTCTGTTACAGAAGATTTTTAA
- Protein Sequence
- MLNVQLSHNIGENICINVSSSVCNICAQNHDLHDCPILLGSRYIPDEPLISRAVQTLPKTLEIARMTDGSTKVITKTNIEQGTTFGPFYAKRLSTMHPSSNFPIKVFGTSPSDTYYLDYSDENESNWMRFIAPACNAVEQNLTCYQMKQDIFYTATRTISVGEELKVWYAPYYALQMKMPLDNNSPNKSIAPRIEKESIKTSSHKEQIALLNKDSAQELAETLPAQRLGARQNKETWNCKLCSTVINSVVSYAKHLMEHYKLLLGVVCNICDKKFHNPAVLERHKRAKHSNLTDRNDSGNQDQSSQGIFLNLNEHLEALDKFSSDKNDTIEQDLLKACSPSKEINSDLPLLDTNSINVNDLLHNICSINGNDPVEDLSSEFLNIVSDENNETSTVNLDCDICEKKFDKLDYLYRHLRKHTGEFICPSCLIVFARKENLLSHTCFAQKALKENLFECSVCCKSFLQKKYLKRHMIKHTEIYFLTESNCCKWCHREFTTRSECDLHKCSAPNHVCLQCRKRFVHKAHLNRHLKSHSEPKPRLKTRIKRKKSEDKPVICEKCGDVFKNSYTLRQHMNSHGERMFECEICNRKFHRIGVLKEHKTIHQSAQVPCDVCGKKLKSKKALDIHMLLHGSKKFQCEKCDKSFFQKCNYLKHYKQIHGERIVWNCPHCSSQFTNKSGYNKHVECHLEPTQHCCTLCSKSFHREYQLKRHLQTSHSNIVYRCPFCHMTARHRHSMRRHFERQHNNLKSDWDKPNFVKTLIEKIEDQKKLCDVTENIPTDVQPLDEFQGINEDHIFQKVQVETFHSTNDGTLLDCPEGNTDLCQLDTVPPLSMNEPSQELTESVLRNAYIFDEHNGEIMFYVLDNSSVTEDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -