Basic Information

Insect: Gonatopus flavifemur
Gene Symbol: -
Assembly: GCA_018340375.1
Location: Contig29:1507465-1516690[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0044 0.61 11.0 1.3 1 23 235 257 235 257 0.98

2 7 2.2e-05 0.003 18.2 4.6 2 23 385 406 384 406 0.97

3 7 7.2e-06 0.001 19.8 0.8 1 23 412 434 412 434 0.98

4 7 4.5e-06 0.00062 20.4 1.6 1 23 440 463 440 463 0.93

5 7 3.6e-08 5e-06 27.0 0.7 1 23 469 491 469 491 0.99

6 7 2.8e-07 3.9e-05 24.2 2.6 1 23 497 519 497 519 0.99

7 7 7.8e-07 0.00011 22.8 3.3 1 23 525 547 525 547 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0044	0.61	11.0	1.3	1	23	235	257	235	257	0.98
2	7	2.2e-05	0.003	18.2	4.6	2	23	385	406	384	406	0.97
3	7	7.2e-06	0.001	19.8	0.8	1	23	412	434	412	434	0.98
4	7	4.5e-06	0.00062	20.4	1.6	1	23	440	463	440	463	0.93
5	7	3.6e-08	5e-06	27.0	0.7	1	23	469	491	469	491	0.99
6	7	2.8e-07	3.9e-05	24.2	2.6	1	23	497	519	497	519	0.99
7	7	7.8e-07	0.00011	22.8	3.3	1	23	525	547	525	547	0.97

Sequence Information

Coding Sequence: ATGGAAGTTACAACCGAAGAAGCACAAGCTGTCCTTTTGGGAGGGATGGAAGGTACCCAATATATAACCATTCAAAGAGCCGATGGAGAAGCATTGGGTAAAGGTGTACCACTTTTAACCTTGAACGGTGACTTACTTTCCGAGGGAATGGTGGTTGATATGATAAACGCCGGCGTGGGTACAGAATATGGAACTACAACTCAATATTATGAAGCAGATGATCTTTTGCCGCATGAACTCACAGAGGAGGATCGTAGATTGGCAGCAGCATTAGTCGCAGTTCAATTACAACAACAGCAGAAGCAACAACAATTGCATAATCAAACTCAACACGAAGATCCAACCCTGCCAGATGTATCTCATTTAGAAACCTTAACACCTGTCAACACTTATTCTATTCAAACTGTACCTGAATCAAATCCACCACCTGTTTATCCAGGCCTACAGTCTTTCAAAAGAATCACTCAAAACGTTAAACAAGAATTTGTTAACGTCAAGAGCGAGTACGATGTAGATGTTTCCGCCGAGAGCAGTGAGGATACAGCACCAGCTCCAGGATCAAAAAGATTTTTACCTCATAAAAAAAGAATACCTCGGAAATTAAAGCAACAAACAAAAAAGAGCTCAATCAGAAAAGAAAGCAACAAATTGAATCAAGAGACCAAATCCATAGAAGCGAACGCGGATGCGCAATCTCAAATTTTCAAATGCGAATTATGTGGTTATAGATCCGACAATCAATTGAAATTTTTTGAACATCTCAAGGTACATTATGAACCAGTGAAACAAGAAATTAGACTAGCGCAAACAACCGCAAACACTAACGTTACGAATTCAGTCACAGAAACTGTACAAAGTATAGAAAATACTGTGATAGAGGAATTCAGTGAACCGGAAGACCTTATGGAAGGTATTAGAGATGTAGTGGAAGAAACAAGAGCGCATATCGATGATGAATCAGGATCTCCGTTATCCGGGGTGAACAACGAATCGTTATGGTCCATCGCTAGTGTTTCAGACCAAACGCAACGGGATGGATTAACGACATCGACAATTGTCGATGAAGATATCCACGACAAAGAGAAGACTGATATTTCAGAAACTGCAAAAAGAAAGAAATCATCTGCGATACGAAAATCCAGTTACGGATTGACGTGTCCTCAGTGCGATCGCTCGTTTCATCATAAAAATAGTTTAGTATATCACATGCGATCTCATAGCGGCGAACGACCGCATCAGTGCGAAGTATGCGGGAAAAGCTTCTTCGCTGCTAGTGCTTTAAAGGTTCATAAACGTCTTCATAGCGGTGATAAACCTTACAAATGTGAAGAATGTGGTCGGCACTTTAGACAGTGGGGTGATCTTAAATATCATTCCACCAGCATTCATTCGGAACAAAAGCAATATCAATGTGAATACTGTGGCAAAGATTTTGCTCGAAAGTATTCTTTAATCGTGCACAGACGGATTCATACGGGTGAAAAGAATTATCGATGCGAATATTGTAATAAAACTTTCCGGGCGAGCAGTTACTTACAAAATCATCGGCGTATTCATACCGGTGAAAAACCACATCCTTGTACCATTTGTGGCAAACCGTTCAGGGTTCGAAGTGATATGAAAAGACATATGCATACGCATACTCGAGGAAAAACCGAGAGGCCATCGAATAAAGGTACGGAAGGGAAGGGGATTTCGGTTAATGAAATTGAAAAGAATTCTTCTCAAGCAAAAACAATACAAGATCTCGTTAATGATCTTAAACTTGAAGTCGAAGCTACGGGAGTAGTTGAAATAGTTCCACCAGATGATAATCCTGAAAGTATATTACCGCACAATAGTGGACAAACATTAGAATATACGGTGACAAATTCGACGGAGGGATCTGTCAGGGATCCATTAGAGGCTGTAGTTCGAACAACAGATAACATGCAGTATTTCTTCATGTAA
Protein Sequence: MEVTTEEAQAVLLGGMEGTQYITIQRADGEALGKGVPLLTLNGDLLSEGMVVDMINAGVGTEYGTTTQYYEADDLLPHELTEEDRRLAAALVAVQLQQQQKQQQLHNQTQHEDPTLPDVSHLETLTPVNTYSIQTVPESNPPPVYPGLQSFKRITQNVKQEFVNVKSEYDVDVSAESSEDTAPAPGSKRFLPHKKRIPRKLKQQTKKSSIRKESNKLNQETKSIEANADAQSQIFKCELCGYRSDNQLKFFEHLKVHYEPVKQEIRLAQTTANTNVTNSVTETVQSIENTVIEEFSEPEDLMEGIRDVVEETRAHIDDESGSPLSGVNNESLWSIASVSDQTQRDGLTTSTIVDEDIHDKEKTDISETAKRKKSSAIRKSSYGLTCPQCDRSFHHKNSLVYHMRSHSGERPHQCEVCGKSFFAASALKVHKRLHSGDKPYKCEECGRHFRQWGDLKYHSTSIHSEQKQYQCEYCGKDFARKYSLIVHRRIHTGEKNYRCEYCNKTFRASSYLQNHRRIHTGEKPHPCTICGKPFRVRSDMKRHMHTHTRGKTERPSNKGTEGKGISVNEIEKNSSQAKTIQDLVNDLKLEVEATGVVEIVPPDDNPESILPHNSGQTLEYTVTNSTEGSVRDPLEAVVRTTDNMQYFFM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00676201;
90% Identity: -
80% Identity: -