Basic Information

Insect: Gonatopus flavifemur
Gene Symbol: gtf3a
Assembly: GCA_018340375.1
Location: Contig8:22046249-22058029[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 6.3e-05 0.0087 16.8 0.1 2 23 744 765 743 765 0.97

2 17 0.059 8.1 7.5 0.7 1 19 771 789 771 791 0.92

3 17 3.9 5.4e+02 1.7 0.9 2 23 798 819 797 819 0.93

4 17 0.00069 0.095 13.5 1.9 3 23 828 849 827 849 0.98

5 17 0.0019 0.26 12.1 2.0 1 23 856 879 856 879 0.95

6 17 6.7e-05 0.0092 16.7 0.7 1 23 885 908 885 908 0.94

7 17 5.5 7.6e+02 1.2 3.6 2 23 916 936 916 936 0.92

8 17 9.8e-08 1.4e-05 25.6 2.1 2 23 942 963 941 963 0.97

9 17 1.6e-06 0.00022 21.8 0.2 1 23 969 991 969 991 0.99

10 17 0.00039 0.054 14.3 2.4 2 23 1003 1025 1002 1025 0.95

11 17 0.014 1.9 9.4 1.2 1 23 1031 1054 1031 1054 0.96

12 17 0.013 1.8 9.5 3.0 3 23 1078 1099 1077 1099 0.95

13 17 0.00082 0.11 13.3 1.4 2 23 1106 1128 1105 1128 0.96

14 17 4e-05 0.0056 17.4 1.0 3 23 1137 1157 1135 1157 0.96

15 17 0.0015 0.21 12.4 2.3 1 23 1163 1186 1163 1186 0.96

16 17 0.23 32 5.6 3.2 2 23 1193 1214 1192 1214 0.96

17 17 0.36 49 5.0 1.9 1 23 1220 1242 1220 1242 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	6.3e-05	0.0087	16.8	0.1	2	23	744	765	743	765	0.97
2	17	0.059	8.1	7.5	0.7	1	19	771	789	771	791	0.92
3	17	3.9	5.4e+02	1.7	0.9	2	23	798	819	797	819	0.93
4	17	0.00069	0.095	13.5	1.9	3	23	828	849	827	849	0.98
5	17	0.0019	0.26	12.1	2.0	1	23	856	879	856	879	0.95
6	17	6.7e-05	0.0092	16.7	0.7	1	23	885	908	885	908	0.94
7	17	5.5	7.6e+02	1.2	3.6	2	23	916	936	916	936	0.92
8	17	9.8e-08	1.4e-05	25.6	2.1	2	23	942	963	941	963	0.97
9	17	1.6e-06	0.00022	21.8	0.2	1	23	969	991	969	991	0.99
10	17	0.00039	0.054	14.3	2.4	2	23	1003	1025	1002	1025	0.95
11	17	0.014	1.9	9.4	1.2	1	23	1031	1054	1031	1054	0.96
12	17	0.013	1.8	9.5	3.0	3	23	1078	1099	1077	1099	0.95
13	17	0.00082	0.11	13.3	1.4	2	23	1106	1128	1105	1128	0.96
14	17	4e-05	0.0056	17.4	1.0	3	23	1137	1157	1135	1157	0.96
15	17	0.0015	0.21	12.4	2.3	1	23	1163	1186	1163	1186	0.96
16	17	0.23	32	5.6	3.2	2	23	1193	1214	1192	1214	0.96
17	17	0.36	49	5.0	1.9	1	23	1220	1242	1220	1242	0.95

Sequence Information

Coding Sequence: ATGGAAACTAGCGATCATAATTACAGTGAACTGAGCACAGATCAGTGCCCCACTCAACTCCCGGAAAGTGCCATTAAACGGGTGTTAGAAGGTAATACTAGCACGCCTGCGACATGCTCTGGACAAAGTCAGCTGAAAATTATTTCATCTGCGAGTAACAAAGAAAACGTAGGAAGTCAAATCAAAGACATAAATGAATTGAAAAAAATTACACCTAAAGTGAAATTATTACCACGAGATGCGAGTAGCTTGAGCGAGTTGACAAAGATAACATTGAAAAGTAAACAAACTGAACATCAAGATCAGCAACCGATCGAAGAACGCACTAAACAACAATTGAAAAAGTATTGTCGCACTTGTGCAGGCTTGAAAGTTCCTTTAGTTGACATTTTTAGTGAAAAAGGTATTCAAATGAGACTCTGTCAACAAATGAAACATTTGGGAGAGATAAATGAGCATGAAAGTCTTTCGACTCAAATGTGTATGGAATGTATCTGCGACTTGAAAATGAGTTACAAATTTTTTATGCAAATTAAAAAAGCAGAAATTAAGTTGAAATCACTTTATCATTCATTAAACGATACTTTTGCAGCTAAAGACGCGGAAAAAGAAAAAATGAATAGTTTATCCAACAACGCCGTTCAACCACCTCGATCCGAAGAAGCATCGCTCTCCGTAGATGTGGAAACTCATCCTACAGGAGAAATTTCCATGATTGGATCTCAAGTCGATGTCAGAACCGAGCCTGAAATTTTTGAAGAAGTGCAACCATCTAGCGATGTCGAATCGATAGAAGAGTTCGATCCTGAAGATCCCCCTTTTGAACCTGACAGTTCAGAAGCAGACGAGACTGAAACGGATAATGCCACCTCACGAAAATCAAATCAACAAAATAAAAGTGATAAGGACGAAAGCGTAAGAAAAGATTACACGAGACAAACGATATCCAAGGCCTTAACAAAACCATCCAATAACGTGACAAAAAAAGAAACCAATCAAACCATATATAAGTATGATATGGCATTGAACGCGTACATCAAAGTGGATACCGATAATGGTGATAAAACAGAAACACCACCTCCACCGTTAATATTCTCTTCCCAACAACCATTCACCCCAACCATGTCGCACATCAACAAAACCGAAAACTCTGAAAGCACAAAAGAAACTTTGAAACAACCGAATATACTAAAAAGAAAGCTTTCTACGAGTATAAAAAAGGAACCGAATGTGGAAACGAATGAAAATTTATGCCCAGTTTCTGTAAGTCAAAGCACTAATAATACGAGCGGAGATGCAAAAATACAAAAATTAAGTTTACTGAATCCTCTGAACATCACCAATGGACGAGAAGATGGAATCATGTATGTTACAGTGAAAGGGAGCAAACCAAATGAATTGTTATTGGTGAAGGTTAAGAAGATGGACAAACCCGTAGAGAAAAAAGAAGAAAAAGTGATAGGAGCGGGTACATCCATCGATCTCAAACCTGTTGAGAAAATTCTAAGGAGATACGAGAGTCAAATATCTAAGGGAAAAGATTTATTTCTAGAGAGAAACAGAAAGCCTGATATCAGAGAGCAAATAATCGAGGAGCAGATCGAAGAGTATAAAAAAAAACGTGAAAAAGTTCTTGGAAGCAGTTTAGTCAATCCTACCCCTAAAGTTGAAGAAACACAAGCTCAGTTGGAGACTCCAACGGTCAAATTATTGCCCAGAACACTTGAATCGGAAAACATCGATGAGACTTTCGTAGAAGAAGTACAAGAAGAACTTGTTAATGAAGAATGTAACATCGTTGACAACGATTTAATACTTGATGAAAAAGTTATTGAAATTCCAAATGAAATAAAAGACGAAGAGGAGGTGGATCCTTTGAGAACTGAAGAACCGTTAAGTCAAACAGATGAATATTCGGCACGCTTAGCAAAATTTAAATTGAAATGGGAAGAGGCTAAAAAGAAACGAGAATTTCTGCAAAAAGAATTAGATGAAACGTGTAACGAAAGAAATATGGTAAAACTGGCTAGACTTTTGGGCGAAAAAGAGTCGAATTTGGAGGAGTTTCAAGAATATTTGAAGCAAAGAAAAATTGTGATAACAAGACTGAAAGACGAAGATATTCTGTCGCTTTACGAAGATAGAAATAACGCTATATTGAAAAAATCCTTTCCGGACTTGATAGACGAAAGTCAACCCGTCGATTATATCCCACGAGAACGTTATTTGGAATGCGATTATTGTCCATTGACATTCGCTTCGAAGGATGTGCTGGAAGATCATCTGAAAACGCACGATTATAAAATACTGCATTATTGCGAAGATTGCAACGAAGAATTTCCTACCAATAAAGCAAAACGAAATCATAGCATGGCGTGTATCAAAAAATTAATATGCAAGTATTGTAATATCCTACTGGATTCGAAGGGTAAAAAACGTCAACACGAGCAAAAACATTGTGATAATATGTTTGGACAATTATGTGATGTTTGTGGAGAAAAGTTCAAACATCAAGGAACATTGGATCAACATTTCAAAACACAGCACATGAGTTGGGAGAAAATTTACCAATGTCCTAAATGCCCGAAAAAGTTTGCCTTCAAACAGAAACTTAGTTTCCATTTAAAATCTGTACATACAACCATGAGAGCTTATCTTTGCGAAGATTGTGGGGCGGATTTTAAGAATCCTGCCAGTCTCAGACATCACAGAATTCGAAAACATCAGCCAGTGGGTAATAAACGAGAATGTCAAGTTTGTCACAAATTAGTACCGTTCTATAGTCTTTCTAAGCACATGCACACTCACAAAGCGTATACCATACAATGCCCGCATTGTGATAAAATGTTCAAAAATAGTTCAACGTTGAAACAACATGTAAGAATTCACGAAGATCAAAGACAATATAGATGCGATACGTGCGGTGTTGGATTCAACAGACGAGATGGTTTGAGACTACACATGAGAGTTCATCAAAAAACGGATAGTCGAGGTCTCAAGGAATGTTCTTGCCAAGTTTGCGGGGAGAAATTCCCAAATCATTCGACGCTCGTTATACATAGAAATCGCGTTCACAAAGACGGTAGACAGTACACTTGTCGTATCTGTAACAGATCTATGATATCAACGAGATCCTTAGAGTGGCATATGTCCCACATCCATGATCAATCCTTACCAGGTCACATCAAGGAAGAACCCGATGGAATTGTACCCGAGAGCAAACGAGTCGCCTGTTATCATTGCAATAAAACCTTCAAAACAGAAATGATTTTAAGAACCCACATAAAGAATACTCACATGGAAAAAGATCCTATGAAGTGTTTGGACTGTGAATTAACGTTCACTTCTGAAGTTAGATTGAGACATCACATGATGGTCACGCACAATAGATTAGAAGGTACATTAGCGTGTCCCCACTGTCCGAAACGATTCGTCAATCAGTTAAGACTGAAAACCCATATGATATCGCATTCCGAGGAGAGACCTTACACGTGTGAAGTATGTGGTTTCAATTTAAAAACAAAGATACAACTCATTAAACATCATCAAAACAGACACAGCGACGAAAGACCTCTACAGTGCAGATACTGTCCGTGGAGGTGTAAACAAGTCAGTGCCCTCGTTTGCCATGAGAGAACTCACACGAACGAAAGACCGTACTCTTGCATCGTATGTAGACAGAGATTCAAGTATTTAGGTGATAAAAATAAACATGAAAGACGCCACGAAAGCCTTGGAGGTTCAGGATTTAAAAGGATAGTGCCGGGAAGAAATATTAAACACTCATCCAAGACTCGAGAGGAAGACACTTCTTGTTCGGAACAAGGAGAAGAGGATGCGAAAAACATGGAAACACAACTTTCCTCGGAAGGACGATACGAGGACGAACCTTCCGACGAGCAGTTCGAAGGGAAATTCGAAGAGGAACAAATCGTCAAGTTCGAACAGCAGGAAATATCCGAAGAGTACGAACAAGTTTATGAACAGGAGTACGAAGAGACGTCGAGGGAAGCTTCGGAAGCGGCTGAAGTGATAATGAGTTTAGAAGATAACAATGTTTACACGGAAGAAGTGACAGCCGACAACATGGAATCTGCTGAAATTATGGCGAGTGATATGATGACAAACGAAATGTTACAATCAGGTACCGTGGTTCATTTACAACAACAAGATGAATCAGGAAAGATTCAAGTTATTCCAGTCATGCTATCTTTGCCTGATTTGTCTGACACTAATACAGGGGTTAATTTAGCAACCGCCTCAATAATGTACAATAATTGA
Protein Sequence: METSDHNYSELSTDQCPTQLPESAIKRVLEGNTSTPATCSGQSQLKIISSASNKENVGSQIKDINELKKITPKVKLLPRDASSLSELTKITLKSKQTEHQDQQPIEERTKQQLKKYCRTCAGLKVPLVDIFSEKGIQMRLCQQMKHLGEINEHESLSTQMCMECICDLKMSYKFFMQIKKAEIKLKSLYHSLNDTFAAKDAEKEKMNSLSNNAVQPPRSEEASLSVDVETHPTGEISMIGSQVDVRTEPEIFEEVQPSSDVESIEEFDPEDPPFEPDSSEADETETDNATSRKSNQQNKSDKDESVRKDYTRQTISKALTKPSNNVTKKETNQTIYKYDMALNAYIKVDTDNGDKTETPPPPLIFSSQQPFTPTMSHINKTENSESTKETLKQPNILKRKLSTSIKKEPNVETNENLCPVSVSQSTNNTSGDAKIQKLSLLNPLNITNGREDGIMYVTVKGSKPNELLLVKVKKMDKPVEKKEEKVIGAGTSIDLKPVEKILRRYESQISKGKDLFLERNRKPDIREQIIEEQIEEYKKKREKVLGSSLVNPTPKVEETQAQLETPTVKLLPRTLESENIDETFVEEVQEELVNEECNIVDNDLILDEKVIEIPNEIKDEEEVDPLRTEEPLSQTDEYSARLAKFKLKWEEAKKKREFLQKELDETCNERNMVKLARLLGEKESNLEEFQEYLKQRKIVITRLKDEDILSLYEDRNNAILKKSFPDLIDESQPVDYIPRERYLECDYCPLTFASKDVLEDHLKTHDYKILHYCEDCNEEFPTNKAKRNHSMACIKKLICKYCNILLDSKGKKRQHEQKHCDNMFGQLCDVCGEKFKHQGTLDQHFKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTMRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECQVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHQKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCRICNRSMISTRSLEWHMSHIHDQSLPGHIKEEPDGIVPESKRVACYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEVCGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCIVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNIKHSSKTREEDTSCSEQGEEDAKNMETQLSSEGRYEDEPSDEQFEGKFEEEQIVKFEQQEISEEYEQVYEQEYEETSREASEAAEVIMSLEDNNVYTEEVTADNMESAEIMASDMMTNEMLQSGTVVHLQQQDESGKIQVIPVMLSLPDLSDTNTGVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -