Gfla008533.1
Basic Information
- Insect
- Gonatopus flavifemur
- Gene Symbol
- Prdm15
- Assembly
- GCA_018340375.1
- Location
- Contig5:7698587-7702741[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.8 5.3e+02 1.7 0.1 5 14 91 100 89 101 0.84 2 13 1.2e-05 0.0016 19.1 4.9 1 23 263 285 263 285 0.98 3 13 1.8e-05 0.0025 18.5 1.0 1 23 290 312 290 312 0.99 4 13 0.0072 1 10.3 1.7 2 23 322 343 322 343 0.98 5 13 2.5e-05 0.0034 18.1 6.8 1 23 421 443 421 443 0.98 6 13 0.0011 0.15 12.9 1.4 1 22 448 469 448 472 0.90 7 13 7.5e-06 0.001 19.7 0.9 1 23 511 534 511 534 0.95 8 13 9.5e-07 0.00013 22.5 3.5 1 23 568 590 568 590 0.99 9 13 0.00012 0.016 15.9 4.0 1 23 604 626 604 626 0.96 10 13 0.00011 0.015 16.0 4.7 1 23 632 654 632 654 0.98 11 13 0.00098 0.14 13.0 3.2 1 23 660 682 660 682 0.98 12 13 3.4e-05 0.0046 17.7 6.5 1 23 688 710 688 710 0.98 13 13 0.00016 0.022 15.6 0.3 1 21 716 736 716 737 0.93
Sequence Information
- Coding Sequence
- ATGGTTTCTATAAGTCCAAATAAACATCTATGTCGTGTTTGTCTTTCTTCAGATCAAAAACAATATAGTATCTTTGCCACAAATTGGAATATCTCTAATGATGAAAATAGCACTTGCAGTTTATTGGAAAAATTGCGTTTATGCGGTGGCATAGAGGTTTTAGAAAACGATGGATTACCAGAGAATATTTGTCAGAATTGTATTATAAGGATAAATGCTGCTCACGATCTAAGAGAACAATGTCAAAAAGCAGATATGAAATTGAGAGAATTGTGCGGTAAACCTTTCAAAACTTATGATACTGGCGTGACACAGCTGCTGAACGATCAATACCGTCAAACCGATCAGTTATTGAATACTTCATGGATTAAAATAGAGGAACACAATACAGGTGAAAATGAAAGTCATTCGGCCAATAAAATTACGCCCGTGTATATTAAAAGTTCCATCGACGGTGGAGGAATGGATGAATCGAACGATATTAATGACTTCAACGACGATACCGATTACAATGACGATGCTACAAAATTTAGATGTGAAACTGAAGATAATGAAGAAAAACACGCGGACAATAACAAACCATTGAAAAAAGAAACTTATCGAACTAGACGATCAACGGTATTCAAACGAGTGACTTCTATGGAAAATTTGAAAAATAACAAAGAAAGACAAAGACAATATATTAAAAAAAATACAAAACACGATATCGTTGAAAAAGAACCTCCAACTGATAAAAAAATGCCTTGTGATAACGATACAACGATGCCTTTGAATTCCGAAAATTCTCACGAATGTCCAAAATGTGATAAATGTTATACCAGTAAAAAATCATTAGATAGGCACGTATTAACGCATAGCGATAAAAAATTCAAATGCGACGAATGTGAAAAGCAATTCATAACTTTTGAAAAATTACTCGATCATATAAAAACTCATGAGAATAAAGAAAAATTCCAGCCAGCTCAATGCAAAATTTGCATGAAGAATTTCCGTAAAACGGATACCATGGTGAGACACTTGAATATACATAAAAGAGCAAATCCTAAAGAGGTATTTTCAATACTGAAAGAAATGAGGGATAGAAGAAAATTGGAGAATAACGACGGGGACAAGAAAACCGATCAAGTGCCCTCTACGATCGATGGAACGGGGAAAAAGCGTAATTCGGAATCGGAGAGAAATCGAATTTGGGATTCTCATTCGTCTAATTTTGATTCTCACAGCGACAGCGAGGTCGATTTACTCGATAATATGCCGGTTCATCGTTGTAAACATTGCAACAAAATCTATTCCACGGAAAAATCTCTAAAAAGACATCTCCTAACGCACGACGAGAAAAGATTCGTTTGCAACGTTTGCAATATGAAGTTTTTCCGTCAAGACAGATTACAGAGTCACAGAGACAGATACGGACACGGCGAAGATAAAGAATGTTCGGAATTTCAAAAGCCACCCGACGATAAATCAGCCATCAAATTGATAAACAGTTGGATAAGAGAGGAACTCGATTCCGATAACGAGGGCAAAGGATTCCCTTGTGAAACTTGTGGAAAATCATACGATACAAAAAAATCTCTACTCAAACATCAAACTAACGTTCATGAAAATCAAGAGGAAAATCATTGTAAAAATTGTGGAGAAATTTGCAATTGTAACGATAAGGATCAATCGATTATTAAGAGCACGAGTAAACCGAAACCGTACACCTGCGAAGAATGTCACAAATCATTCGAGAAGGAGAATAAACTTCAGAAACATATGAGGATCCACGAACGCGCAAAGGAACAGCAGGATTCGAATTTTAAACGATTTCTCTGTCATATATGTAGCAAAACTTTCAGACAAAACACGGGACTCATGTTTCATATGAGGACTCATACCGGCTACAAACCTCACGTTTGTAAATATTGTGGTCGTGGTTTCACGTCGAATTCGAATTGTATCAATCACGAGAGAACACATACAGGCGATAGACCGTTCGTTTGTCACTTCTGTAGTGCCGCTTTTGCTAAATCTTGTACCCTCAAAGCTCACATCACAACCCACACGGGGGAAGCTAATTATCATTGTAAGACGTGTGGTAAATCTTTCAGAAGATTAAAATATCTGAAAGAACATAGATTCACTCATACGGGAGAGAAACCGTACGCTTGTAAAATTTGTGGCACCGCTTACAGTCATTCCGGTAGTTTATTTGTTCATGAGAAAAAGTGCAAAGCTCAGTACAATAATTATCAATCCGGATCAACGCATAATCAATCGCAGCCTAATCTGTCTGTCACCATCCCAGTGATCACGCCTATAATCACCACTACCGCTACCACTTTGCCTTCGCATCATCATTTGAATCACATACACAGTACTTTGAATGTACAAATGAATAAAAATTATATGGAACATATTCCTAAATTGAACGCTCAACAGCATCCCGAGGATGCGACGTCGATGGTCGTTAATTCTGGTTTGCATCCTCACGCGGGTATCGAAGTCTCTGAAATGACATCGGAAATGAGAAATTTCACCATCATCGGACAAATGTTTCATTCTTAA
- Protein Sequence
- MVSISPNKHLCRVCLSSDQKQYSIFATNWNISNDENSTCSLLEKLRLCGGIEVLENDGLPENICQNCIIRINAAHDLREQCQKADMKLRELCGKPFKTYDTGVTQLLNDQYRQTDQLLNTSWIKIEEHNTGENESHSANKITPVYIKSSIDGGGMDESNDINDFNDDTDYNDDATKFRCETEDNEEKHADNNKPLKKETYRTRRSTVFKRVTSMENLKNNKERQRQYIKKNTKHDIVEKEPPTDKKMPCDNDTTMPLNSENSHECPKCDKCYTSKKSLDRHVLTHSDKKFKCDECEKQFITFEKLLDHIKTHENKEKFQPAQCKICMKNFRKTDTMVRHLNIHKRANPKEVFSILKEMRDRRKLENNDGDKKTDQVPSTIDGTGKKRNSESERNRIWDSHSSNFDSHSDSEVDLLDNMPVHRCKHCNKIYSTEKSLKRHLLTHDEKRFVCNVCNMKFFRQDRLQSHRDRYGHGEDKECSEFQKPPDDKSAIKLINSWIREELDSDNEGKGFPCETCGKSYDTKKSLLKHQTNVHENQEENHCKNCGEICNCNDKDQSIIKSTSKPKPYTCEECHKSFEKENKLQKHMRIHERAKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQSGSTHNQSQPNLSVTIPVITPIITTTATTLPSHHHLNHIHSTLNVQMNKNYMEHIPKLNAQQHPEDATSMVVNSGLHPHAGIEVSEMTSEMRNFTIIGQMFHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -