Gfla002986.1
Basic Information
- Insect
- Gonatopus flavifemur
- Gene Symbol
- wek
- Assembly
- GCA_018340375.1
- Location
- Contig12:1763480-1766896[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00039 0.054 14.3 0.1 2 23 141 163 140 163 0.95 2 15 0.00047 0.065 14.0 0.4 2 23 168 190 167 190 0.91 3 15 0.48 66 4.6 0.3 3 23 307 327 305 327 0.95 4 15 0.15 21 6.1 2.8 2 23 333 355 332 355 0.94 5 15 3.4e-05 0.0048 17.6 0.1 1 20 365 384 365 386 0.95 6 15 1.8e-05 0.0024 18.5 4.6 2 23 397 418 397 418 0.98 7 15 0.009 1.2 10.0 0.3 1 23 431 453 431 453 0.90 8 15 1.4e-05 0.002 18.8 1.8 1 23 461 484 461 484 0.97 9 15 1.4e-05 0.0019 18.9 3.3 1 23 490 512 490 512 0.97 10 15 0.0067 0.93 10.4 5.3 2 23 516 538 516 538 0.96 11 15 0.025 3.5 8.6 1.7 1 23 560 582 560 582 0.95 12 15 0.00077 0.11 13.4 2.8 1 23 588 610 588 610 0.97 13 15 2.5e-07 3.4e-05 24.4 4.7 1 23 615 637 615 637 0.98 14 15 0.0011 0.16 12.8 6.9 1 23 645 667 645 667 0.97 15 15 2.4e-05 0.0034 18.1 2.5 1 23 673 695 673 695 0.98
Sequence Information
- Coding Sequence
- ATGGATTTTGAAACTATGGGTGGTGAAGTTGTCATCGAAATTGATGACAACCAAAACGACACTGTGGCAGATGAGAATGAGTTTGAGACTGAAAAAGTGAATGAAATCTGTCGTTTGTGTGGTGAAAAAACATCCGATCGTTTATCGATCTTCGAGGAAAATGATTTGTATATAGCTGAAAAAATAAGTAGATGTTTACCAATAATCGTACTAGCGACTGATAAATTACCAAATTATATTTGTAAACGTTGCCTGCATTGTTTAAATATAAGTTACAAACTGATAGTAAGATCCATACGAGTGGATGCTATGCTTCGTAAACAATTGATCGAATCTGAGAATACGAAAAATAAAATGATGAGATCGACTCACAATGCGACTATGACGGAATTAAAAAAGCGAGCCATAGCGGGTCCGGTGGAATGTGAGTTGTGCGATAAAAAGTTTCAAGATTTAGACGCGTTTGACAAACATATGGAGATCTCGCATTTACAACGTTGGAGATGTAACATGTGTGATCAGAGTTTTGAAAATTCAGTCGAATTGGTTACCCACAAAACCCTCAAACACAATGGCAAAATCATTATATGTAAAAACTGTACCGCGGAGGATAACGAAAGTTTCGACGAAGATTCCATCGATATTAAGGAAGAAGTTTTGGATCTGGATGAACAAATTTCTGTTAAGGAAGAAAACAACTTATCCGATGCGGTAGAAGTTCCTGAAATATCGCACCATACCTATAGCAAATCCGCTAGAAGCGCACCAACGAGAGAAGTTACTACTCCTCCTCCTCCTCTTCCTCCTCCTCCTCGGACCAATGATCTCGATTCTATCACTCCAAACACAATTACCACAACTAAATCCAATAACTTGAATATAATCAAACACAATGATAAATATCGTTTCGCTTTATTTTGTGAAACTTGTAAAATTGGATTCGGCGACGAACGCTACTTCAACGGTCACAATAAAATTCACGAATCCGTATGTATGACGTGCGCTATATGTCACACCGATTGTACGTCGATTTACGATTTGTTTCTTCATAAACGTGCTACTCATAACATGTACAAGAAGGTACAATTGAAATACGTTTGTGAAAAGTGTGGGAAATTCTTCACCAACAGTTGGCAGTGGGAAGCGCATAGAGCTGGAAAAGCGTGCCCTAAAAAAATTCTTGACAACACTTGCAAGTACTGTAAATCCTCTTTCACCACGAACTACAAATTAACCAGACATTTGAGGAAACACAAAACTGAAATGTTCAACGATCCAACCGCAACGATATACAGATGCATCGCCTGTCCAAAGATATTCGTGGATAAAGAATTTTATGAAAAACATAGAAATGTACACGATCCAGAATGTTGGGACAAATTCAGATGCACTTTATGCAATAGATCTTTCCGAGATAACGTGAGATTGAGGGAACATCAGAAATCCATTCATCAAGGTATAAAGCCTCATCAGTGTGATATCTGTGGCAGAACTTTCCATAGATTGTCCAATATGAAAGTACACAGGGAAATTCATATGGGACGTAAATGTACTCACTGTGGGGAAACTTTCCAAAAGATGAGAGAATTATTACATCACGTGAGGCAGAAACATGGCACCGAGCCGGATGCTTCGAATCCTATGGTGAGGAGATCGTACCGTAGAAACAACGGTAGTTACATTTGTCGATATTGTGGGAAAAAATTATCCTCCTACAAATCTGTTCTCGATCACGAGCACATTCATACAGGAGATAAACCTTACAGTTGTAAAATTTGTCATAAATCTTTTGGAAGCTACAGTGCTCGATGGACCCACGAACAACGTCACGAGAAGGGGAATTTCGTTTGCGAACACTGCGGTAAATGCTTCAGTTATAAACAGAACTTGAGTGTACATATTCAGACTCACGCACCCGTGGAGGATCGAAAACACATGTGCGCTACATGCGGAAAAAAGTTCCTAAGAAAGTGTCACTTGAATATACATATGCGAATACACGACGGTATCAGACCCTACACCTGTGACATATGTTTCTTTAGTTTCACGCAAAAGGGTGATATGAGAAGACACAGGCTTCGGCATAACAAAGGAGACGTTAAGATAAGACAGCACAACAACAGCAGCGGTAGTTCTCAACAAATGAAATTGGAACAACTAGTAAAATCCCTACCGATAGACGAGGAGAATATCGAGAACAATGTGATACATGAGAATTATCCTGAGGTTCACCAAAGTTACGAAATCGTTCATCAAAAAGAAGAGAATATAGAAATTGATCAGAATTATCAAGTTCATGAAAATTACGAAATTGTTGAAACGAAAAGTGAAATTCAACATAACGATGAGTTGAGTGAAATTCATGAGAGTCATGAAAATATTATCATCATCGAAACCCAAGAATTTATGTAA
- Protein Sequence
- MDFETMGGEVVIEIDDNQNDTVADENEFETEKVNEICRLCGEKTSDRLSIFEENDLYIAEKISRCLPIIVLATDKLPNYICKRCLHCLNISYKLIVRSIRVDAMLRKQLIESENTKNKMMRSTHNATMTELKKRAIAGPVECELCDKKFQDLDAFDKHMEISHLQRWRCNMCDQSFENSVELVTHKTLKHNGKIIICKNCTAEDNESFDEDSIDIKEEVLDLDEQISVKEENNLSDAVEVPEISHHTYSKSARSAPTREVTTPPPPLPPPPRTNDLDSITPNTITTTKSNNLNIIKHNDKYRFALFCETCKIGFGDERYFNGHNKIHESVCMTCAICHTDCTSIYDLFLHKRATHNMYKKVQLKYVCEKCGKFFTNSWQWEAHRAGKACPKKILDNTCKYCKSSFTTNYKLTRHLRKHKTEMFNDPTATIYRCIACPKIFVDKEFYEKHRNVHDPECWDKFRCTLCNRSFRDNVRLREHQKSIHQGIKPHQCDICGRTFHRLSNMKVHREIHMGRKCTHCGETFQKMRELLHHVRQKHGTEPDASNPMVRRSYRRNNGSYICRYCGKKLSSYKSVLDHEHIHTGDKPYSCKICHKSFGSYSARWTHEQRHEKGNFVCEHCGKCFSYKQNLSVHIQTHAPVEDRKHMCATCGKKFLRKCHLNIHMRIHDGIRPYTCDICFFSFTQKGDMRRHRLRHNKGDVKIRQHNNSSGSSQQMKLEQLVKSLPIDEENIENNVIHENYPEVHQSYEIVHQKEENIEIDQNYQVHENYEIVETKSEIQHNDELSEIHESHENIIIIETQEFM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -