Basic Information

Insect: Gonatopus flavifemur
Gene Symbol: -
Assembly: GCA_018340375.1
Location: Contig4:9300112-9302756[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0076 1 10.2 0.1 3 21 8 27 6 28 0.85

2 13 0.32 45 5.1 0.2 1 12 230 241 230 250 0.86

3 13 0.0042 0.58 11.1 2.4 1 20 364 383 364 385 0.94

4 13 0.00024 0.034 14.9 0.5 2 23 390 411 390 411 0.97

5 13 0.00064 0.088 13.6 5.4 1 23 422 444 422 444 0.98

6 13 7.9e-05 0.011 16.5 0.1 1 23 463 484 463 484 0.94

7 13 0.00045 0.062 14.1 0.1 2 23 490 511 489 511 0.95

8 13 3.2e-05 0.0045 17.7 4.8 1 23 538 560 538 560 0.99

9 13 1.4e-06 0.00019 22.0 3.7 1 23 566 588 566 588 0.96

10 13 0.00016 0.023 15.5 4.1 1 23 594 616 594 616 0.97

11 13 9.8e-07 0.00014 22.5 0.8 1 23 622 644 622 644 0.98

12 13 6.2e-05 0.0086 16.8 0.2 1 23 648 670 648 670 0.99

13 13 0.00027 0.037 14.8 0.2 1 23 678 700 678 700 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0076	1	10.2	0.1	3	21	8	27	6	28	0.85
2	13	0.32	45	5.1	0.2	1	12	230	241	230	250	0.86
3	13	0.0042	0.58	11.1	2.4	1	20	364	383	364	385	0.94
4	13	0.00024	0.034	14.9	0.5	2	23	390	411	390	411	0.97
5	13	0.00064	0.088	13.6	5.4	1	23	422	444	422	444	0.98
6	13	7.9e-05	0.011	16.5	0.1	1	23	463	484	463	484	0.94
7	13	0.00045	0.062	14.1	0.1	2	23	490	511	489	511	0.95
8	13	3.2e-05	0.0045	17.7	4.8	1	23	538	560	538	560	0.99
9	13	1.4e-06	0.00019	22.0	3.7	1	23	566	588	566	588	0.96
10	13	0.00016	0.023	15.5	4.1	1	23	594	616	594	616	0.97
11	13	9.8e-07	0.00014	22.5	0.8	1	23	622	644	622	644	0.98
12	13	6.2e-05	0.0086	16.8	0.2	1	23	648	670	648	670	0.99
13	13	0.00027	0.037	14.8	0.2	1	23	678	700	678	700	0.97

Sequence Information

Coding Sequence: ATGGGATCATTGAATTTGGTTTGTCCTATGTGTTGCGGAGAATCCTTCAGCAATCCACAGGCATTGAAGTATCATCTCCTGAGTATGACGGATAATTTATATTGCCCTGCTTGTTCTTCACGCTCCGACTCTGTGATGGCTTTGATTCAACATTTGGATCGTTGCGGACAGGTGTCAAACGTCGACAAACAACTCAATCAAGAATTGAAACAAATGGCTCCCAAAACCGAAGACAGTACTACAGAAATTCTCATGGAAACTGACATGAAAGAAATAAATAGAAGTTTTTTAGCCACCGTGAGTGATAATGGAATAATGATAGTGGGAGGTGCACAGACTCTGCAAATGGACGATAATGGCGATATTAAAGTTATCGAAAAATTGGATAACGAAGATTCAAGATCCGGTCACAATTCTCTAGCCGATGAAATTTCCAACATAGTTCATAACGAGAAACCAGATAGTCCTTTGAATACGAATTCCTTAGTGAGTTTGACATCCGCGAATTTGAGTGAAAAAATCCAGGATAAAAACGTAATCAGTATATTGCCCGACGATAGCGAGATTCTCAACGATCACGATAGCCCTATGATGAACATGAATCAAATTCGAGATGTCGGAGATTTCGATGATTCTACTTTACTGCCAGTAAAAAAAGAATTTTCTGGGATGGAAAAAGAAGCGTTGTATAGTTGTAGCAGTTGCGGAATGAGTTTCAATTCAGTTTTGGAGCATATCAGAGAATATCACGATGGTCAAGAGGTGGTACTTGAAATGGCGGAACAGCAATTCGACGATCTAAACGTACCTTCTGTTTCCATCCCTGCGTCCTCGGAAGATCTCGAAAGCGTCGCTCCGACGAATACCACGGGTCGACAACGTCAAACTATCAACACTTTAAGAACCGAGGAGTGCGTGGATAACGAAGGTCGTGTATATACAAGAAAAGTTGTACAAATAGAAAGATTTTGGGACAGAACTCCCACGACATTGCCGTCCTCCAAACCCCCGATGATAGAAAAATTCTTCTCCAACGCTGAAGGAGTGAAGATGCGAGAGAAGAAACTCGCTTCAGCGCCGATTAGAATGTACCGATGTACTCAATGCAAACAACAGTTTTCTAAATTGGGGAACTTTCGAGTGCACGCGTGTTTGAATGGTAGCAATCGTTGCGAGAATTGCGATCAAACTTTCGCAACGTTGAAGGCTCTCCAACTTCACTCAAAAGTCCACGAATGTGAAACCGATGGAACCCAAAAGTCGTTTGTGTGTTCAACTTGTGGGACTGAGTTTTGTTCGCATAAGAGTCTACGTCTTCATTCGAGAATGCATGCTCCGGTTAGAGCTCGTCACGTCGATGCTCCCGAAGGAACCCCCAACGATACTTTTACTTGCCCAGAATGTGGAAAAGTATTTTCCGAATCGTACAGAGAAGCGCACATGGCTTTACATTCCGGCGATTCCGTGACTTGTACAGTGTGTAATAGAAAATTCGATTCGGCGGATAGTTTGGCCATGCACGCGGCAGTTCACGCGGAACTCGGTCAATCTCCTTCCCCTTTACCACCTTCCGTAACGGAAATAATCGATCCCATCGAGTCCCACAAACCTTATCAGTGCCAACACTGTGGTCGAAGATTCACTCGACCGCACGAGAAGGTCAAGCACGAACGAATACATACAGGAGAGAAACCGCATGCCTGTGAAGTCTGCGGCAAAACCTTCCGCGTTTCTTATTGTTTAACTCTACATATGAGAACCCATACAGGAGTGAGACCGTACGCTTGTCAACATTGCGGTAAAAGATTCAAAGCGTCTTCCGTTTACAATCATCATTTGTTAACACACGGTGAGGAACGTGCATATACGTGTCCTTATTGTCCAAAAACATTCAAGACTCGTGTTCAATTGGCCGGGCACAAAAATAGTCACACAAAACCTTTCAGATGCACCGAATGTTCACGACCATTCGCATCCCTTTACGCCGCTCGCGCGCATATACAGACACACAAGAAAGACAATAATCTCAAGTTCAGTTGTTACATTTGCGGCGCTTCTTACGGCCGTGCTTTCGCCCTTAAGGATCACTTGAAGCAGCATGGACAGGACGTGCTCGCTCCACCGGAACCAGCGAGGGAAGAGGAAGTACACGAAGGGGATGAATTTTTATTACCCGACGCGGATATCGAGGAAGACGAGGAATTGATTATTCCATCCCCTCGACCCATCGCTCAATCCTCCGAGATCGAGGAATCCGATTGA
Protein Sequence: MGSLNLVCPMCCGESFSNPQALKYHLLSMTDNLYCPACSSRSDSVMALIQHLDRCGQVSNVDKQLNQELKQMAPKTEDSTTEILMETDMKEINRSFLATVSDNGIMIVGGAQTLQMDDNGDIKVIEKLDNEDSRSGHNSLADEISNIVHNEKPDSPLNTNSLVSLTSANLSEKIQDKNVISILPDDSEILNDHDSPMMNMNQIRDVGDFDDSTLLPVKKEFSGMEKEALYSCSSCGMSFNSVLEHIREYHDGQEVVLEMAEQQFDDLNVPSVSIPASSEDLESVAPTNTTGRQRQTINTLRTEECVDNEGRVYTRKVVQIERFWDRTPTTLPSSKPPMIEKFFSNAEGVKMREKKLASAPIRMYRCTQCKQQFSKLGNFRVHACLNGSNRCENCDQTFATLKALQLHSKVHECETDGTQKSFVCSTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNDTFTCPECGKVFSESYREAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHAELGQSPSPLPPSVTEIIDPIESHKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEVHEGDEFLLPDADIEEDEELIIPSPRPIAQSSEIEESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -