Basic Information

Insect: Gonatopus flavifemur
Gene Symbol: -
Assembly: GCA_018340375.1
Location: Contig2:43027882-43033324[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.7e-05 0.0023 18.6 0.7 1 23 149 171 149 171 0.95

2 15 0.00063 0.087 13.6 1.1 3 23 179 199 178 199 0.99

3 15 8.9e-05 0.012 16.3 0.1 1 23 265 287 265 287 0.98

4 15 0.18 24 5.9 0.1 1 23 293 316 293 316 0.96

5 15 1.4e-06 0.00019 22.0 0.7 1 23 343 365 343 365 0.98

6 15 1.2 1.6e+02 3.4 0.0 1 23 380 402 380 402 0.86

7 15 0.35 49 5.0 0.3 2 23 409 431 409 431 0.94

8 15 0.0026 0.36 11.7 3.0 2 19 439 456 439 460 0.95

9 15 0.00013 0.018 15.8 3.5 3 23 468 488 466 488 0.97

10 15 0.0094 1.3 10.0 0.1 3 23 495 515 494 515 0.97

11 15 5.5e-06 0.00076 20.1 0.4 1 23 524 546 524 546 0.98

12 15 0.0024 0.33 11.8 0.2 3 23 554 574 552 574 0.97

13 15 0.0021 0.29 12.0 0.2 3 23 582 602 580 603 0.94

14 15 0.005 0.7 10.8 0.0 1 23 617 639 617 639 0.94

15 15 0.0078 1.1 10.2 0.0 1 20 1023 1042 1023 1045 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.7e-05	0.0023	18.6	0.7	1	23	149	171	149	171	0.95
2	15	0.00063	0.087	13.6	1.1	3	23	179	199	178	199	0.99
3	15	8.9e-05	0.012	16.3	0.1	1	23	265	287	265	287	0.98
4	15	0.18	24	5.9	0.1	1	23	293	316	293	316	0.96
5	15	1.4e-06	0.00019	22.0	0.7	1	23	343	365	343	365	0.98
6	15	1.2	1.6e+02	3.4	0.0	1	23	380	402	380	402	0.86
7	15	0.35	49	5.0	0.3	2	23	409	431	409	431	0.94
8	15	0.0026	0.36	11.7	3.0	2	19	439	456	439	460	0.95
9	15	0.00013	0.018	15.8	3.5	3	23	468	488	466	488	0.97
10	15	0.0094	1.3	10.0	0.1	3	23	495	515	494	515	0.97
11	15	5.5e-06	0.00076	20.1	0.4	1	23	524	546	524	546	0.98
12	15	0.0024	0.33	11.8	0.2	3	23	554	574	552	574	0.97
13	15	0.0021	0.29	12.0	0.2	3	23	582	602	580	603	0.94
14	15	0.005	0.7	10.8	0.0	1	23	617	639	617	639	0.94
15	15	0.0078	1.1	10.2	0.0	1	20	1023	1042	1023	1045	0.94

Sequence Information

Coding Sequence: ATGGATGTGACGGGAGATTTGTCTCTACAATGGGTGGAAGAGGTGGGGCATGTTATTCACGAAGAGGTCATTTGTGGCCTGGATAATGTGGCTGAATTGGTTGCTCCTACCGAAGAAATAATTGGAGCTTGCGAAGAAGTAACCATAGAAGAAACTGTAGAATCGGTACCTGATTCTAATGCAAACAGAGAAACTGAGGAAATATTAATGGTTCCTCAAGCTAGCGATATGGAGTCCATATATATCGTACCGCAAGATCAAGGTCATGATTATTTAAACATACAGGTCACAGAAGAAGTAATAACAGATAATTGGGATAGATCTGGTCCTGATGATGGGGTTGAAATTCCGGAGACCAAAGTATCTCACGATAATTTACTTGAATACGATGATATGGAAATACCATTACCGATAGACCAAGATTCTTACACAAACACTCGTCCGTATCCCTGTGACTTTTGTAGTCGTAGGTTTAGGAAAAAAGCGAATTTGATGAACCACATGGTGGCTCATCAAACGGATCGTCCCCACGGTTGTAATCTCTGTGGAGCAAGATACGTCAGAAAATGTGATCTTATGAATCATTTGAAAATACACGCTTACGCTCCATCAAGAGACGGTTTGGAGGATGATTTGAACGACGAAGACGCTCTCGCGCCAGAAGAAGAGGAAGTGACCAAGGGCAGACGTAAGAAGATACAATCCAACACACCCAGAAAACGCAAACACAATCTCGTTGTACCTAAACGAGCTACTGAAAATGACAAGATAGAAATGGATCCGACAAAGCCTTACGTGTGTCAGTACTGCGGAGTGGGATTTGCCAGAGAAAAAGCCCTTGCTTCTCACTCACGTATACATGGGGGTGATAGTCCGTTCGAATGCACTTCCTGTGGAGATATGTTCTGGGACGTCAACGCATTGAGAGAACATATAAGAGTGAAGCACGGCAATAATCTACCGACCGAAGATATGGAGGAATACGACAATGATGCCACATATACCGGTGATGAGAGATTTGGTGAATTTTATTGTAATACCTGTGGAATTCCTTTCAATCGTCTGGATTTACTCAAACGCCATCAAAAAATTCATGTAAAACAAGAGACAGATACAATGGAAAGCTCAAGCCAACATCACGTGTGTAATGTTTGTGGTGAATGGTTTGAAGAAGCATTGGCATTGTTAGCACACGCAGAACTCCATGCAAGATCTCCCAGTCGTCGCTGTTTATTATGCGGTGAAAGGTGTCGAGATGACGCTGAAGTAGCGGAACATGTTCGGCAAAGTCATGCGGAAAATGCGCCACCAAATACATGCACATTATGTGGAAAAACCTGCAAAGATAAACGCAGTTTATTAAAACATTCGTGGGTTCATAATGTCGATAAAACTTTTGGGTGCACTAAATGTGGCAAACGTTTTCATAGTAAAGCCAGATTGCGAAGACATATGGTTTCTCATCGTAATAAAATGGTCGCTTGCGATGAGTGCGGAGAGGAATTCCCTGACGGCAGAGCATTAGTGAGTCATAGACATTCGCACAATAAAGATTTGGGTGGCCGATCTTTCCCTTGCAGAGAGTGTGGAAAGACCTTCGGGAGTCGTAGTTCCCAACAAATACATATTCGGATTCATACCGGGGAAAGACCTTATGGATGCAGATTTTGTTGGAAAGCTTTTGCGGATGGAGGAACATTGAGGAAACACGAACGCATTCATACCGGGGAAAAACCTTACGGATGTGCCATTTGTCCTCGTGCTTTCAATCAAAGAGTAGTTTTACGCGAACACGTGCGAGCACATCATTCTGGTCCTGACCCCAAATGCGTAGGCAGTCTTACTCCATACTTATGTAAAGTATGTGGAGAAGCCTTTGGAACTTCCGAAGAAATAGTACTACATATTGTAAAACATTGTGATGCGAACACGGCGTCAAAACGTCAACCACAAACCGGACCACGTAAATACAAAAGAAGGCGTAAACTGAAACCTCATGAAGCGAATACAGTTTTACGTTTAACCGAGACGTACAATTTACTTGACGCTGGATCAGATTCCGATGATAACACCAAACGAAAACTTGGCAAAAAGAACAAACAGCATCGATCCAACGTTGAGGAGGGCTATCAGAACGTCCTCAAGAGTTTTGAGAGTTCATTACAGAACATCAATTCAATAGTAAGTAATTCCAAGTTGAATCCCGCAAAGTCCAAACTGTCGAAAAAAAAGGTGCGAAAGGACGAGAAGAAAAACGAGACTCAAACTTCTTGTCAACCAGGTAGACCAAAAATGATTCATACACAAAAAACGAGGGTACCCGTAGAAGTTGGTAGCGACGGAGTTAAAAAGGGCCAAAAAACTAAAACAATGGTAACTAGGACTCCCAAAGTGATGCCGAACGAGCATAAGTTAGGCGTATTCCCAGGTGGTGAAAGAAACAGACCTAGAACAAAAAACGTTAGTTATCATATCGAAGGTAAACTTCAAATATCGCCTGCAACATTCCCTAGGCCAAAAGATCAAGATACATCCAATGTAAATAAACCTCAATTATCGACAAGTATCAAATTGGAGCCCGATTTGAACAAATCTAACGATAATTATAAGAATAACAATGGCAATATCGGTAACGTCGGTAACAGTAGCAAAATCGAATCCAACGTTATGAAGAAAAAGGCCGGTGTCGTCAGGAAAGTGAGAAAACAAAAATCGGTTACCGTGAAGCAGGAACCGAAAGAAGTACTGCAAGACGAGGGAGAATTACAAAACAATAACAATACAGAAAACAATAATGATACTTCAAATTTGATGATGAACGAAGAAATCGTAGAACAACACAATTTAGAGATTCAATCTTCTTCGGAACCGAATCAAGAAGAGGGAGAAAGCATTCTACCGGATTTAGAAAGACTGAACGAAGATACCAATGAAAATATTGAACCTGGAAATGTTAAGCTTAGAGTTAAGGTAGAATCGACTCCTCAACGTCTTCTAGCGGTTCACGGTGTTATCACACCGGTGGTCGACGAAGTCCCTGAAACTATAATACCCGATGCGGTTGAATACACATGTGAAATGTGCGCAGCTGTATTTTCGAGTCGTGCAGAGCTATTGGTACATGTTCCAATACACATTTGA
Protein Sequence: MDVTGDLSLQWVEEVGHVIHEEVICGLDNVAELVAPTEEIIGACEEVTIEETVESVPDSNANRETEEILMVPQASDMESIYIVPQDQGHDYLNIQVTEEVITDNWDRSGPDDGVEIPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYVRKCDLMNHLKIHAYAPSRDGLEDDLNDEDALAPEEEEVTKGRRKKIQSNTPRKRKHNLVVPKRATENDKIEMDPTKPYVCQYCGVGFAREKALASHSRIHGGDSPFECTSCGDMFWDVNALREHIRVKHGNNLPTEDMEEYDNDATYTGDERFGEFYCNTCGIPFNRLDLLKRHQKIHVKQETDTMESSSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGERCRDDAEVAEHVRQSHAENAPPNTCTLCGKTCKDKRSLLKHSWVHNVDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCVGSLTPYLCKVCGEAFGTSEEIVLHIVKHCDANTASKRQPQTGPRKYKRRRKLKPHEANTVLRLTETYNLLDAGSDSDDNTKRKLGKKNKQHRSNVEEGYQNVLKSFESSLQNINSIVSNSKLNPAKSKLSKKKVRKDEKKNETQTSCQPGRPKMIHTQKTRVPVEVGSDGVKKGQKTKTMVTRTPKVMPNEHKLGVFPGGERNRPRTKNVSYHIEGKLQISPATFPRPKDQDTSNVNKPQLSTSIKLEPDLNKSNDNYKNNNGNIGNVGNSSKIESNVMKKKAGVVRKVRKQKSVTVKQEPKEVLQDEGELQNNNNTENNNDTSNLMMNEEIVEQHNLEIQSSSEPNQEEGESILPDLERLNEDTNENIEPGNVKLRVKVESTPQRLLAVHGVITPVVDEVPETIIPDAVEYTCEMCAAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -