Gfla010438.1
Basic Information
- Insect
- Gonatopus flavifemur
- Gene Symbol
- SNAI1
- Assembly
- GCA_018340375.1
- Location
- Contig63:63871-272454[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.4 1.3e+03 0.5 0.1 3 16 474 487 472 489 0.74 2 13 0.00057 0.079 13.8 0.1 1 23 686 708 686 708 0.95 3 13 3e-05 0.0041 17.8 1.2 1 23 716 738 716 738 0.98 4 13 6.8e-06 0.00094 19.8 0.2 2 23 746 767 745 767 0.97 5 13 0.001 0.14 13.0 1.9 1 23 773 795 773 795 0.98 6 13 1e-05 0.0014 19.3 1.1 1 23 802 824 802 824 0.98 7 13 6.8e-06 0.00094 19.8 1.1 1 23 830 852 830 852 0.96 8 13 1.8e-06 0.00025 21.6 0.1 1 23 858 880 858 880 0.98 9 13 7e-07 9.6e-05 22.9 1.2 1 23 886 909 886 909 0.96 10 13 3.6e-06 0.0005 20.7 0.5 1 23 915 938 915 938 0.96 11 13 3.3e-06 0.00046 20.8 4.6 1 23 944 966 944 966 0.99 12 13 9e-05 0.012 16.3 0.4 1 23 972 994 972 994 0.94 13 13 0.00028 0.039 14.7 0.1 1 23 1000 1024 1000 1024 0.94
Sequence Information
- Coding Sequence
- ATGGAGGTCGATCAAGTTCTGGAAAATGAAGAAACAATTTTACAATCGCTCGACATTTCCAATGAAGAAATCGATGATGATTTCAGTATTGATAATGAACCACCGGACGATGAGAATTATGAAAGTGATGATGGCACAGCTTGGTTTTCCGAAAACCAAGAATATTCTACGCAAGAAGAAGGGGAATCTAGAAACAGTGAAATAATGTTCAAATCGTCTTGTCTCACAGTACTAGCTGTATTAGATATGGTACAATGCCTAAGTCTACGCCACCATTTATCTGACGAAGCCAGGAATTCATTATTAGACTTCGTCAAAATTTTAGCGGGCCCTAAATTCGAAAATTTAAATACTTCCAAGTATATCGTTGGGAAAATGTACAATCCACCCCCTACTATTACGCAAAATGTTCTCTTAGCAGCGATCTGGACATCAAAATGTGAACCTTCACCAGCTTTTATGAATTCATATGTAGGTTCGTTTATTACCCAACTATATAAACTTATGGATGAAGGAATGACGGTCACAACTGATGGAGGAAAAGCAGTTCGATTTATTCTTCGTCCACTTTGTGCTTGCGTAGACACTGTAGCTCGTCCAATAATCCAAAATAGGATACAATTTAATGGCTACATGGGATGTAGTTGGTGCTATGCACACGGAGAATTTGTACATAATGCAATGCGTTATCCTTTTACGCAACGGAATCCCCCCCTACGCACACATGCCAATTACATCACCAACATGACAGAAGCGATGGACATGGGGAGAACTATTGATGGAGTGAAAGGATTTTCAACGATTTCTGAACTTGAAAACTTCGATGCTGTTTGGGGTTTGCCATTTGACTATATGCATGGTCTTCTGCTAGGAGTCTCGCGTCAAATATGGACAATTTGGACGAAGCGGACATCAGAGTGTGATGTGTATTTAACAAAAAATAGGGAGCACATCGATAATCGGTTGACTAGCATCAAGATGACCCATGAGATACATCGATTACCAAGATCGATGAAAGAACAACATCGCAAAGCTACGGAATGGCGATCATGGTTGCTCTTTCAGAGTATTCCATGCCTTTATGGAATTTTGGATAGCGACGCTTTACGGTCATTTTCTCTCTTGATAAAAGTAACACATTCCCTTCTTTCCGAAAAGATTTCTAAAACAGATCTTGAGCAGCATGAAAAGGATCTCATGACATTTGTGGCAGAAATTATACCAAGAATGACAGCTGATTCAGAAAAAGATAGTACTCACTGTTTAGTGTGCAACAGCAAAGTGGGAGTTTCAACCAGAAATAGTATAAATGTTTTCAGTGAAACTTCTGTCACTTCATCAGAAAAACCACTTGTAGATACCATATGCACAGTTTTAGGAACCAAAATCAACCAAGCAAATGTACACTCCCTGGTTATATGTAAAAAATGTTATAAATTATTCAATGAAGTTGACGAACTGGAAAATAGATTAACAGAACTGAAATTAGAATTATACAACAATTATAAAAATACGTTGAAAAAATTAACGGATATGGTTCAAAATGATGAAGAATATAATGATCATGATTACACCGATAATATAAGAGATTCTGAAGCTGAAATGATTCTGGAAGATGAAACAGAAGGGTCCGTGCATGCTAAGGATACTGAAATGTTTCATCACACTAGCGAGGGAGAGCAAGAGAATCAAAATTTTGAAAGAATAGTGAAGGAAGAGGAGGTGGATGAAGATGAGGAATCAAAGTCAGTACTTTTTGAAAGAGCAGAAAGAATGGATGGACAAGAAGATTACGAAGAAGATGAAGAAGAAGAAGGAGCGGAAAGAGGAGACGAGGTTTACGATAGAGGCGATTCTTCCAATGATTCTAAAACTTTCAATGACGAAAAAAGATTGAAAAAATCGAAAGTCAAAATTGAAGATATCCAAGAACAAATAGTTACTAGAGATGGTCAAACGTATACATGTTTGTTATGCTCCAGTGAGCAAGAGAAAACCATGGGTGATGCCAAAGTGATTATAGCTCACATGAAAAACGTACACGAAGCTCGCTTATACATTTGCGATGTATGTGGAATGGATTTCAGGAAAAGAAATGACCTCTCCGTTCATCTTGACGATCACGTTGCTAAAGAAGAAGGCGATTTTCAATGCGAAGTGTGCAACAGAATATTCAGTAATCTACGATTGTTTAGAATTCATAAGAGAATACATTACCCTCAAGTGAAATCATGGCCTTGCGATACTTGTGGTAAAAGATATAGTTCAAGGAATCTATTAGAAGAGCACATTAATACTCATACAGGAGTTCGTCCGTACGCTTGTGAAACTTGCGGTAAAGATTTTGCTTCCAAATATACTTGCAAGGCTCACGCTAAAACTCATGAAGTTCGTCCTCGTCCTTTCGAATGCCCTCTGTGCAATAAAACGTTTTTGAGTCAACAGAATCTTAATCAGCACGAGAGAACTCATAACGGGGTTAAGGAATATGTATGCCATCAATGCGGAAAAGCATTTGGTTCGTCACATAATTTAGAAGTTCATAATATTGTTCATACTGGTTACAAACCGTATATTTGCAAAATATGTGGAAAAGCATTTGCTCGTAAAGCAGAAATAAGGGACCACGAACGGACCCACACGGGAGAAAAACCATACCAATGTGAATTTTGTGGAGCAACTTTCAGTCAAAGATCGAATTTACAATCCCATAAACGTGCGACTCATTATAACGATAAGAGATACAAATGTGACGATTGCGGTAAGGGATTCAAAAGACGAAGACTTTTGGATTATCATATAAAAGCGGCGCATACCGGTGAGAGACCATATAAGTGTCATATATGCACAGCGACGTTTGTTTACCCTGAGCATTTTAAGAAGCACATGCGTATACATACGGGAGAGAAACCATACCTCTGCGAGGTTTGCGGTAAGGCGTTCAATAGCAGGGATAACAGAAATGCTCATAGATTTATACACAGTGATAAAAAGCCGTATGAATGTCTAGTATGCGGGATGGGATTTATGCGGAAACCATTACTCTACGCTCATATGCAAACTCAAGGTCATTTGAATGATACAATTGTTGTGAATCAACCTAGATTAACAACCGAAGAGGAACAAGTTATAGCCATTCCTGATAACAATGTGGAACTACTGATGGATGGAACCGGTCATGATCAGTTAGAAGAGACTGGATTGTACGTGACCGACTTGAAAGATCATGTCATAATACAGCAGGGAAGTGAAGAACAGATTTACAACGAAGTAGATGTATTAAATTTAACTGCTGAAGAAAATGTTGGAAGTGAACAAGTGGATCATTTGGTGGTCGACAGAGAATGTTTCAGGCATCAAGGACCACTCAACTCGGGACTTGAACAGCAATTTCCATTGCTAATGAAGAAATACCGTGGAATAGGCCTACTGGGGATACCATGTCAACCCTGA
- Protein Sequence
- MEVDQVLENEETILQSLDISNEEIDDDFSIDNEPPDDENYESDDGTAWFSENQEYSTQEEGESRNSEIMFKSSCLTVLAVLDMVQCLSLRHHLSDEARNSLLDFVKILAGPKFENLNTSKYIVGKMYNPPPTITQNVLLAAIWTSKCEPSPAFMNSYVGSFITQLYKLMDEGMTVTTDGGKAVRFILRPLCACVDTVARPIIQNRIQFNGYMGCSWCYAHGEFVHNAMRYPFTQRNPPLRTHANYITNMTEAMDMGRTIDGVKGFSTISELENFDAVWGLPFDYMHGLLLGVSRQIWTIWTKRTSECDVYLTKNREHIDNRLTSIKMTHEIHRLPRSMKEQHRKATEWRSWLLFQSIPCLYGILDSDALRSFSLLIKVTHSLLSEKISKTDLEQHEKDLMTFVAEIIPRMTADSEKDSTHCLVCNSKVGVSTRNSINVFSETSVTSSEKPLVDTICTVLGTKINQANVHSLVICKKCYKLFNEVDELENRLTELKLELYNNYKNTLKKLTDMVQNDEEYNDHDYTDNIRDSEAEMILEDETEGSVHAKDTEMFHHTSEGEQENQNFERIVKEEEVDEDEESKSVLFERAERMDGQEDYEEDEEEEGAERGDEVYDRGDSSNDSKTFNDEKRLKKSKVKIEDIQEQIVTRDGQTYTCLLCSSEQEKTMGDAKVIIAHMKNVHEARLYICDVCGMDFRKRNDLSVHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCDTCGKRYSSRNLLEEHINTHTGVRPYACETCGKDFASKYTCKAHAKTHEVRPRPFECPLCNKTFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSSHNLEVHNIVHTGYKPYICKICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCHICTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEEEQVIAIPDNNVELLMDGTGHDQLEETGLYVTDLKDHVIIQQGSEEQIYNEVDVLNLTAEENVGSEQVDHLVVDRECFRHQGPLNSGLEQQFPLLMKKYRGIGLLGIPCQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -