Gfla013857.1
Basic Information
- Insect
- Gonatopus flavifemur
- Gene Symbol
- -
- Assembly
- GCA_018340375.1
- Location
- Contig13:417548-441074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.004 0.56 11.1 2.0 1 23 371 393 371 393 0.97 2 19 0.029 4 8.4 0.5 2 23 443 464 442 464 0.94 3 19 3.8e-06 0.00053 20.6 2.6 1 23 531 553 531 553 0.98 4 19 0.00032 0.044 14.6 0.9 2 23 557 578 556 578 0.96 5 19 1.6e-06 0.00023 21.8 1.1 2 23 638 659 637 659 0.97 6 19 3.3e-05 0.0045 17.7 5.3 1 23 664 686 664 686 0.98 7 19 0.00012 0.017 15.9 0.7 1 21 692 712 692 716 0.92 8 19 0.0004 0.056 14.3 3.7 2 23 792 813 791 813 0.95 9 19 0.00034 0.046 14.5 4.1 1 23 865 887 865 887 0.96 10 19 0.00021 0.029 15.2 0.7 1 20 892 911 892 913 0.94 11 19 0.00044 0.06 14.1 0.3 2 23 924 945 924 945 0.97 12 19 2.1e-05 0.0029 18.3 0.6 2 23 984 1005 983 1005 0.97 13 19 1.9e-05 0.0027 18.4 1.6 1 23 1010 1032 1010 1032 0.95 14 19 0.00011 0.015 16.1 2.9 1 23 1038 1060 1038 1060 0.98 15 19 3.4e-06 0.00047 20.8 0.4 1 23 1076 1098 1076 1098 0.95 16 19 2.8e-07 3.8e-05 24.2 0.6 1 23 1104 1126 1104 1126 0.99 17 19 3e-05 0.0041 17.8 0.2 1 23 1132 1154 1132 1154 0.97 18 19 0.00011 0.015 16.0 4.1 1 23 1160 1182 1160 1182 0.96 19 19 0.0078 1.1 10.2 0.4 1 20 1188 1207 1188 1209 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAAGTAAATACAACGGATCCGCAACAAAATGATGAAGGACTTGATTCTGCGGTTGAAATATGTCGTGTTTGTCTGCTCAGTAATCTCGTCATGCGAGACCTGTTCCTGGAGAACGAGGTCGAGTCTTTATCCGCCAAGGCTATGAGTTTCGCCAATGTTAAGATAATTCCAGGAGATGGGCTGCCTCATAGAGTATGCTGTGTATGTGCAGCCAAATTGGAATCTGCATATGAGTTCAAATTACAAGTCGAGCAGGCGGATAGTGTATTACGAGAACGGTGCGAACCATTGAACATCAAAGAGGAATTATTCTTCAACGAGGTAGAAGTTCATCTAGAGGCTGAAAGAAATGAGGCGATAGAAGAAATGCACATCGAAGGCTCCTACGAGAGTACAGACGAAACTTTAGGACAAGAACATTTAGTTGAGAAATCTAGCCTTCTGAAAGATCAATTGGCACTCTTACAAGTTCAGGAACTGGCAGAACAAGAACAGGTTTTATGCAAAGAGCAAGAAAGTTCTCAAGAAATAGAACAAGAAGCAAACATTATATTAGCTGTGAGTTCTCAACAGGCACTTGAAAATGCGGTAGAAGGAAACGTTCAGAACGCGGTCAATCCTTTGCAGTACGAAGAGACGATTAAAGCGGAAACCCTTCATTCCAACGAATTAAATGCAATTTCATCTATAGAGCATAATTACATGATCCAACAGGAAAGTTTAAATCTCAATCCAGAAGAACACTCGTCGTTCAACGACGAAAACATCTCGGATGATTATGCCAATAATTTAGCGGATATCAAAGACTCAAATGACCAAGGGCAACCCGACGAACAGATGGAAATATCTACAAAATCAGAGACTCCTTCGACGGCGACCTCAATGGCAATGACAATTACTGCATCGCCGCAAACGCCAACGGAGCAGACAGAAACTTCGCAAAATGAAACCAGAAGGAGTAAACGCAGAGCGGCTATCAAAAAAGCGTTGAACGCCGATCGTGATTCGGACGAGGAAAATTATTTTGAAAATTTAAACCTCAGTTCTAGATTGAAAAAAGTTCAAGCTGATAATAAATTAGAATCAGAGAAAGTTTATTTCATGTGTTACCTGTGCGACAAACAATTCATTTCCAAGGGTATTTTAAAAGAGCACATGCATTCTCACGAGGAGGTGAGAAGAACGTTGTCGCTTAAAAAATCATTAGATAAAGACAAATCACAGAAATCTCCTACCAGCGCGCTAAAAACGCCTACCACCCCTACCGCCCCCAGTCCGACGCAAAAGATACCCCCATCCGGTAAAAAAGCTAATAAATGTCCGTATTGTGGAAAAGAGTATCTTTATATAATTTCATACAATAAACATTTGAAACAGCACGAAAAAGAAAAAAGCGAATTGAAAGAGGACCCCATGCCTCTCGAGATTTCATTTCGCGAAGACGAGCGTAATTTGGATTTTGATAATTGCAATAATTCTCAGTATTCGGATTTGGATTGTAGAAAGCAAACGAAGGAGGATAACGATATGGATCCAAACAATAGCAAGTTGGATGATAGCATCAAAGAATCCGTAATATACTCCTGCAATAAATGTGAAGAAAAGTTCCGTACGAGAAAAGATTTGAGGAAACACTTGATAACGCACATCAGTTTGAAATGTAATGTTTGCGAGGAAGAATTCAATTCTTTGGAATCATTGAAAAATCATCGTACCAAACACGTTCTGGAAGGTGTTTTGACGAGAGAGGAGTTCAATAGCGAGGCGAAAGATGGGATCGTGAAAGAAACGACGGAAGAGAACGGTGATAAACGGTACGACAGTTCTGATTATTTCAACAACGATGACGACGATAACAACGATAACAACGACGAAGCTTGGTCGCAAATCAAAGAACTCAAATGCCCTGATTGTCCCATGACGTATTCGCATAAAAATTCATTGGTCAGGCACATGGAAACTCATGCAGGTTTGGAGTATACTTGTAAAATGTGTAATCAAGAGTTCATAAGGAGAGATCATTTGCACAGACACATGGAACAACACTCAAAAGTGAAAACTTATAAATGTACTAAATGCGATAAGAGTTTCGGTAATGAATTAACTTTGCGCAATCATTTGATAGCTACCAATCATAAGACAGTTATGCACGGACAAGAGTACGATCCCAACAAGCGTATCAAGCGAGTCGCCGCTAAAGCTGCCCAAAAGATCATCGATATGATCAAAACGGAAGATAACATGGAATACGACGACGAAAATGAGGACGACGAAGTTTGCATGGCTCTGGAGAAACGTTACAATCGCAAACGAGAGCCCGCATCGAAGAAAACTAATACTCCTTCCTCGAAGAAGGAATTAGAATGCGCGACGTGTAATAAAAAGTGCACTTCAAAGCAGTCCCTCACGAAACACATGGAACAACACGTGAAAGACGAGACGGCAGTTGACAAGGGGGAAACATCGGGAGACAATACTAAAGTCAAGAAAGAGCAAAGAGTGAGCGGTGGTATTGAAATGGATAACGATACCAATGATAATTCTGATTTTGAAAGTGGTTTAGATTGGCCGATGGATATTCATGAATGCGTTACTTGCAAGAAACGATACAGTACCAAAAAGTCTCTCTTACGGCATCAATTGCTCCACGAGGAACCAAACTTCGAATGTGATATATGTAACGTTAAATTCTATCGTAAAGATAAATTGAAAGCGCATTACGATAAGTGTTCTGAAAGAAATCCTGATCAGGTTAGAAAGTGCAATATCTGCGGAGATAGTTTTGAAAATAATGCCATGTTGAAGGTGCACAGGGCCAAACACGTGACTGAAGGTATTCTCACGGAGGAAGATCTTCGGGACATCGAACCCAAACCGGAAGAGAGGAGATTAGGTGAAAAAATAACTAGAAAGAGGAGAACGGATATCGTAGGTCTCGAATGTACCGAATGTAACAAACAGTACACGTCTAGGAAAGGTCTCTTACGCCACATTCAAGTTCACGAGGGTAAAAAGTATCTCTGCGATATATGTCCGAAAAAGTTCTACAGGAGAGAACATTTGAAGATACACGTAGCCAAACACAACATGATCAAACCGTACAAATGTACAAGGTGTACGAAACGTTTCATCAAAGAGGAACAACTCACCAATCATCTCTCCAAACACGATAGAACGTACAAAAAGAATAAAGAAACCGACAGTTCTAAGAGATTCCTCTGCGAGATTTGTTCGAAAAGCTTCACGCAATCTACAACCCTAATCGCACATCTTCGAGCGCACAATGGCATCAAACCGTACGTTTGCGAGGTTTGTTCCAGACCTTTCACCACCAATGCGTATTTAAAAATGCATATGAGAACACATACTCAAGAACGTCCCTATATCTGTCAATACTGTTCCAGAGCGTTTGCTAGAGCTGATACCTTAGCGAATCATTTGACTTCCCACACGGGAGAGGCTAAGTATCATTGCAAGTATTGTCCAAAGAATTTCCGACGTCTCAAATCTTTGAAAGAGCACGTTTTTATTCACACCGGTCAAAGACCGTACGCTTGTCCCACCTGTGATCGTAGATTCAACAACAACGGAAGTCGTTACGCGCATAGCAAAAGATGCAAACAAAATTTCTTACAAAATCCGAATCGTAATCAAGGGTTAACTCAAGTACAAGTACAGCATCAACAGCAGCAACAAACCTCTCAACAGCAAAGAACTCATCAAACGACTCTCACTCCAGCTCAAGTAGTCAAAGCCCAAAACATCAAAACCATAACGATCGCCAGACCAGCGGACGCGGTCACGGCGCAACAAGTAATGCATCAAGAAATATTAATGCCCTTGATTTTGCCTCTCACGGTAACCCTTGCCGATGTCGGGGAAGAAGTCATACTACCCGAAGGAACTAAAATATTCACAACCACTTAA
- Protein Sequence
- MDAVEVNTTDPQQNDEGLDSAVEICRVCLLSNLVMRDLFLENEVESLSAKAMSFANVKIIPGDGLPHRVCCVCAAKLESAYEFKLQVEQADSVLRERCEPLNIKEELFFNEVEVHLEAERNEAIEEMHIEGSYESTDETLGQEHLVEKSSLLKDQLALLQVQELAEQEQVLCKEQESSQEIEQEANIILAVSSQQALENAVEGNVQNAVNPLQYEETIKAETLHSNELNAISSIEHNYMIQQESLNLNPEEHSSFNDENISDDYANNLADIKDSNDQGQPDEQMEISTKSETPSTATSMAMTITASPQTPTEQTETSQNETRRSKRRAAIKKALNADRDSDEENYFENLNLSSRLKKVQADNKLESEKVYFMCYLCDKQFISKGILKEHMHSHEEVRRTLSLKKSLDKDKSQKSPTSALKTPTTPTAPSPTQKIPPSGKKANKCPYCGKEYLYIISYNKHLKQHEKEKSELKEDPMPLEISFREDERNLDFDNCNNSQYSDLDCRKQTKEDNDMDPNNSKLDDSIKESVIYSCNKCEEKFRTRKDLRKHLITHISLKCNVCEEEFNSLESLKNHRTKHVLEGVLTREEFNSEAKDGIVKETTEENGDKRYDSSDYFNNDDDDNNDNNDEAWSQIKELKCPDCPMTYSHKNSLVRHMETHAGLEYTCKMCNQEFIRRDHLHRHMEQHSKVKTYKCTKCDKSFGNELTLRNHLIATNHKTVMHGQEYDPNKRIKRVAAKAAQKIIDMIKTEDNMEYDDENEDDEVCMALEKRYNRKREPASKKTNTPSSKKELECATCNKKCTSKQSLTKHMEQHVKDETAVDKGETSGDNTKVKKEQRVSGGIEMDNDTNDNSDFESGLDWPMDIHECVTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSERNPDQVRKCNICGDSFENNAMLKVHRAKHVTEGILTEEDLRDIEPKPEERRLGEKITRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTYKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFLQNPNRNQGLTQVQVQHQQQQQTSQQQRTHQTTLTPAQVVKAQNIKTITIARPADAVTAQQVMHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -