Gfla001148.1
Basic Information
- Insect
- Gonatopus flavifemur
- Gene Symbol
- cheC
- Assembly
- GCA_018340375.1
- Location
- Contig22:2942209-2942700[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-09 7.3e-07 29.1 0.0 8 41 25 58 20 61 0.89 2 2 6.1 1.3e+03 -0.4 0.0 33 45 125 137 125 137 0.85
Sequence Information
- Coding Sequence
- ATGGCTGGAAAGAAAAACCTTAAGGAGAAAAAGCGTACATACTACAATTACAGTGGAGAGAACGTTCGAGGAGCTTTATTGAAAATTCGTAAACGTGAGATGAGTATCAGGAAGGCAAGTCTCCAATACAATGTGCCGAAAAGCACGCTCAGTGATATTTTACGTGGGCGTGTACCAGAAAACTCTCGTAGAATGGGTCGGGACACTTATTCGACTGAGGCTGAGGAAAAAAAATTGGTTGAATGGTGCATTTCTCTAGCAAAATGTGGGTTCCCTAGAAGGAATGGAGATTTACTAAACACGGTTCAAACAATAATCAAGGAAGATAGTAGGGTAACTCCATTTGTAAACGATAGACCTGGGAAAAAGTGGCTCTCTTCCTTTTTCCGTCGACATCCTGAGCTTTCTCAAAGAACACCTGAATCAATTAGTAAGGGGCGTGCCATTGTCACAGAGCGAACAATTAGAAAATGGTTCTCTGAATTGGAATGA
- Protein Sequence
- MAGKKNLKEKKRTYYNYSGENVRGALLKIRKREMSIRKASLQYNVPKSTLSDILRGRVPENSRRMGRDTYSTEAEEKKLVEWCISLAKCGFPRRNGDLLNTVQTIIKEDSRVTPFVNDRPGKKWLSSFFRRHPELSQRTPESISKGRAIVTERTIRKWFSELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -