Gfla015547.1
Basic Information
- Insect
- Gonatopus flavifemur
- Gene Symbol
- -
- Assembly
- GCA_018340375.1
- Location
- Contig4:29916763-29918688[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-10 1.8e-07 31.0 0.0 3 35 18 50 17 58 0.94
Sequence Information
- Coding Sequence
- ATGGCTCCACGCAAACCAATTTCACAAAGACAACGGCAAACTTGGTGCAAGGAGTCAATGAAAAAAGCCATCGAAGATGTGCGAAATAAGAAAATGGGCTCATTAAAAGCTTCCAAACTGTACAAAGTACCCCGAACAACTTTAAGACGTTTGGCAGCTAAAGTAGATGTATCAGCTGAAGAAGCGACTTGTGCGAAGCTGGGAAGAAAACCAACATTGCCACAAGAACTAGAGAAATCATTAGTGCAATACGTTTTGACAATGGAAGCTAAGTTATTTGGCTTAGTCCGAAAGGATGTTATGAGTTTAGCCTATCAGTTAGCAATAAAAAATAATATCACTCATACATTTTCGGCAAAAAATAAAAGCGCCGGTAAAGATTGGCTTAAGTCATTTTTAGAAAGACATCCAGAACTTTCTTTTCGCCGTCCAACAGGAACTTCTTTTGCTAGAGCTAAGGGGTACAATAAAGAAAGTGTGAACCATTTCTTTGATCTCTATGAGAAACTGATAGATAACTACAAATTTTCTCCAGAAAAAATTTATAACGTGGACGAGACTGGCATCAGTGTGGTTCCATCCCAAATGCTCCAAGTCCTAAGTCAAAAAGGAAAACGGCAAATTGGTTGTTTAACATCAGCTGAAAGGGGGTCTCTAATAACTTGTGTGTTAAGTATGAGCGCTGGAGGTTCATTTGTTCCACCCATGATTATATTCCCCAGGAAAAGAAGTCATCCGCTTTTAATGAAAGGTGCACCTCCTGGTGCCATACATGAATGTCACCCTTCAGGTTGGATTCAAACCAACTTATTTACAAAGTGGTTTCAACATTTTATTCAGCACGTGAAACCCTCAGAAGAATCTCCAGTATTGCTTATTTTAGATGGCCATACCAGTCACACCAGAAACCTTGAATTGATAGATCTCGCAAGAAACAATCATGTCCACTTACTATCGATTCCTCCACATTCTAGCCACAAAATACAACCTTTAGATAAATCATTTATGGGTCCACTAAAAAAACATGTTTCTGATGGAATTAAATCATGGGTGAGGAACAATACACGGCCCTTAACACAATATGATATGATGGAAGTATTTGGACGCGCGTATCTACGCACTCAAAGCGGCGAGATAGCTGTCAATGGTTTTCGAGCAACAGGTCTATATCCGATAGACAGAAATGTTTTCAAAGATTATGATTTCATTGATATGAATGACGACGAATACAGAATCTCGAATCAAGAAAACATCATACCAGAATCAACTACTTCGTCTATTCCCGCAATAGAAAATGATACTTTCGACGTAACACATTCCATAAATGAACCTGATATGAGTAATGCGACAGCTAATGATGCTACCTCGGCTGTAAGAAACCAGAGCAAAGCTCCGCCTGGAAGTTTCGAAAAAGATGTAGCTCCCGTTGCGACATCGTCACAGTCATCAACTTCAAAAGATAATAACTTTATAACGCCATTCCAATTATCTCCGATACCAGAAATAGCTCCTAGGAAAGCTACTAACCGAGGTAGAAGGGCTACGAAGTCGACATTGCTTACTTCATCCCCGTACAAGAATGAATTGCTAGACTCATTGAAAAAGAAACAAGACCGAATCGAAAAGACTATGAATAAAGCCAAGAAAGGAAAAGGCAAGGGCAACAAGACAAAGTCCAAATCTAAGGAGGTACAAATGTCTAGCTCAGAGGAAGAAAATGAATCTTTGTACGACGACAGTTCTGATGAAAGTCCTGATAGGAGCAATGTTTCTGATGCAAAGTGTCTGTATTGTGAGGGTCTTTATTCTATGGATAACAGGGGCGAACCATGGATTCAATGCTTATGTTGTAAATTATGGGCTCACGAAGACTGCTCAGGAGTGGAAACCGATGTTTTCTTTTGCGAATTTTGTTCTGCAAAGTAA
- Protein Sequence
- MAPRKPISQRQRQTWCKESMKKAIEDVRNKKMGSLKASKLYKVPRTTLRRLAAKVDVSAEEATCAKLGRKPTLPQELEKSLVQYVLTMEAKLFGLVRKDVMSLAYQLAIKNNITHTFSAKNKSAGKDWLKSFLERHPELSFRRPTGTSFARAKGYNKESVNHFFDLYEKLIDNYKFSPEKIYNVDETGISVVPSQMLQVLSQKGKRQIGCLTSAERGSLITCVLSMSAGGSFVPPMIIFPRKRSHPLLMKGAPPGAIHECHPSGWIQTNLFTKWFQHFIQHVKPSEESPVLLILDGHTSHTRNLELIDLARNNHVHLLSIPPHSSHKIQPLDKSFMGPLKKHVSDGIKSWVRNNTRPLTQYDMMEVFGRAYLRTQSGEIAVNGFRATGLYPIDRNVFKDYDFIDMNDDEYRISNQENIIPESTTSSIPAIENDTFDVTHSINEPDMSNATANDATSAVRNQSKAPPGSFEKDVAPVATSSQSSTSKDNNFITPFQLSPIPEIAPRKATNRGRRATKSTLLTSSPYKNELLDSLKKKQDRIEKTMNKAKKGKGKGNKTKSKSKEVQMSSSEEENESLYDDSSDESPDRSNVSDAKCLYCEGLYSMDNRGEPWIQCLCCKLWAHEDCSGVETDVFFCEFCSAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634390;
- 90% Identity
- iTF_01091784; iTF_00754519; iTF_01367705;
- 80% Identity
- -