Basic Information

Gene Symbol
ARID5B_1
Assembly
GCA_018340375.1
Location
Contig2:32543453-32678851[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.5e-24 1.5e-20 73.7 0.0 1 89 326 412 326 412 0.95

Sequence Information

Coding Sequence
ATGGATAAAATAGAGTTATTGGGTGGCGCATGCTTCAGCCACGGCCCTTACACATTTTACAAAGCCGTGCGAATAGGAAACGGCCGTGTTTTACGCTTGGGAAGTTTTTTTTTAACCAAATTATGGAGCGATGCCGATCTCGTCAGTATCGGCGAACTCCAGTTACTTTGGATGGACAGTCGTGGACCAAATCAACCACTGGCTTCGTTACGACTTTATTTTCTGCCAGAGAATACACCGGATGGTCGAAGGGATGTACACGGAGAGGACGAGGTGCTGACGATTTCAGAAAAAGTGGTGGTCCGAGTTAACGATTTGGTAACATGGTTATCACCCAGTTTGGAGTGGTCATGGGGGAGAGAAGTATCACATCCTCCAACTCCGGCAACATCCCCCGACAGCAGTCCTCAAAGTTACCAAGAAACCACGACCACTAGCAGTAATAGCTCTTTAACGCAGCCACAGGTGTTGACCGATCCGGGTATTGATTTTTCAGATGTAGATAAACAGCAAAAGGATTATGAAACTAATCTGACTTCGACGAGAAAATCCGAAGACGATGTACAAACGAAAGTTGTGGTCCTCTCTTATCCGAGGTATTGTAGATACAGAGCCCTTTTACGTCGATTGGAAGGTGCTCAACCGTCCTGGCTTTGCTCCACGGTAGCGGCGGCTTTGGGCGGTTTTACCGCATCCCCTGGAACGAGAGTACTCTTTTGCAGAGATACTTTCGATTATCCGGATCTTGAGACACACGAATTACTTTGTAATCATCTTGCCCCAAAATTGAAAGGTCGGCCACGAAGGAAACGTAAAAAGCGTAGCGCTTCACCCGGGGAATCCAGTAACGAGAGTGAAGCTTCGGTAGCTTCGACATCGAAGAGCGGTCAATCTACCGGTTCGAATCAAATTTTACCCACAGTTGGAAGACCACCCTTATCGGGAGTGAGAAGAAGTGAAAGAAACAGCAGCGCCGAGGAAAAGAAATTTATTACCGATGTACAGCAATTCATGAATTCTCGTGGTTCGCCCATCGGAAAAATGCCATTGCTCGGTTACAAACAAATCGATCTCTTCCTTTTCTACACGAAAGTTCAAACATTGGGTGGCTATGATTCTGTCACTTCTGGTCGCCTCTGGAAATCCATTTACGACGATATCGGTGGTAATACGGGATCAACGAGCGCCGCAACGATTACCCGACGTCATTACGAAAGATTATTGTTACCTTATGAGAGGTATCAGAGAGGAGAAGAGACAAAAGTGAGACTGACACATAGTAGACGCACGAAGAATAGCAGTAATTCAACTGAAGAAGTGGTGGATGTTAAGCGGGAAACCAATAGTCCTGCAGAAACATCCTCCCCGCTGCCATCAACTGTGACCCCTGATCCCACCAACGCAACCCCGACCACTACCCCTACCGTTACTCCGCCGTTACAACCCATTCTCTCAACTTCGACGTTCCTACCGGGTGATAAGCCCAAGACTGAGCCTGCTACGCAAGGCAAAACGTCATCCCTTCGAAGTGTAAGAGTTAAGCCAGAACGACTCAAATCGCTTAATACTATAATAGCTAATAATACGTCTCCACCTGCCAATCAACAACAATCAACTCAACTGCCATCATCGCCTCCACCGTCATCGAATACGTCGACCTCAACGCCGAGCAGTACGCCACCATCCACTATGCCGACAAATGCCGCGGTCGCTGGAGGGCAAAGCGTTTTAGAACGACAACTCAATAGTCCTTTATTAATTACTCCACAACCACCTCCTCCACCCCCGCCACCGCCCCCGCCTTCGTCCTCTCCGCCAAACTTACCGGTGACCACGGTGACGACTAACGCGACAACCGTGGTCACGTTAACTCCGCCACCCGAAAAAGATATGAAGGAAATCAAATTGGATTCCAAACAAACTACCTTGATGCTCGCCCAAGGTAAAGAAAATATTCCTCTATTCGAGGAGAAATCCATAACTATGGAAAACAATAATAGATCATCCAGATCTCCAAGATCTTCGCCCGAAGTTATAGATCTTGAAATGGAAAGTGATACGAGTCGGGATAAAATCATTATTCCGAGTTTCAAGAAGAGAAAACTCGAAATCCTTCGAGAGGGTGGCCTTGAAGTTACCGCCGTCGACTTGGCCGATATTAGACCGAGTGTCATTCAAACTTCGCCAGCTCCTAAGAACGATGAGAAATCGCAATCCTCTCCTTTGCTTCATCACACTCCTTCATCCTCTCCCTCCCCAGGTGCACAGAAATTGATTTCCGTTACCGTCACCCCAGACATCGGCCACATGTTACCATCCCCGCAAGAACATAATCATCATCCTCATCACCATCAACAGTCGCAACAACAGCAACAACAACAACAACAACAACAACAACAACAGCAACAACAGCAACAACAACAACAGCAGCAGCACCACCACCATCACCCTCATCACCACCATCATCATTCTTCTCCTAGATTGCACCCTGTTTCGAACGAAAGGAAATCCTCTTTACAAATTACCCCACACAATATGAATAATAGTCGTGTTATAAACCTTGGTACCTCGAATAACGCTGGATTATTACAACTCTACGCGAACGCCGGAGTCGCTCCGTCAAACTCCTCCTCTTCTTCTTCTCCGTCTCCTCCACCTGCTATAATTTCGAAATTACAACACTCGAACGTCCCTTACCAGAATACGAATCATAATCGTTTCGTACCGCCCAACGGAAGGTTAATTCCACCCAAAGTAACGCAATCCAGATCCATATTCGCGCACAACGAAAAAATGGTGTATGGAAATCCAAAAGAGATTCTTCTAAGTCCTTCTAAGAGTATTAACCCACATATTTTACGTAGTCCTACGTTATCGAGGTCTCTCCACGTAACTCCGCAGCCACCGCAACAGCAACAGGAGCCAAATAACGTGGGGGCGGTAGGAGGAAATATTCTGGATCTCACGCATAGAGGTGGGAGTAATGAAAAACGAAAAGATGGCTTATCAACGGCAACGATGTCGGTGAGACCGAGTTTGGAAATCGTTAGGGTACCAGTGGTACCGAGACCTAACGGTGGTAACAATCCTTTAAATTTGGAAAGCAGGAACGGTAGTAGTAATAATAGTAGTAGCAGTAGTAATAATAATAGTCCGAAATTCAAAGACGAGAAACAAATTCAACCACACCAAGAGAGGAGAAATTTCCTTGGATATCAAAATATTCTAGACTCACGGACGATGGCGTCGAATAATTTAGAAATAACCCTGGTGAATCCAACGAAGCAACAAAAACTTCATCAAATTAATGTTCCACCTACACCGAATCTAACTCCATCAAATTCTAGTAGAAGTAATACAGTATCTATGATGCAAAGGAGACAAGTCAATGGTCAGTACGCAACTAGGAACGAACCGTCACCAATCCCTCCTCATACTCCAAGAAAAACACCGAGTCATCCGCCGGTTATTCCAAACGTGCCCAATTTGAATCACTTAAACAATGGTAATCCATTCTCAAGAACAGCACATATGCAACAACAACAGATGTCGATAGACAGAAGGAAAACTACAGATATCAGTGCCAAAGAACATCATCATCATCATCAAAGGAAACTTGAGAAAGATATAAAGTGTTTATCATCGGGCCCACCACCGGACGCGAGGCGAACTACTTCGGTTCCTGGATATAACCCTGCAACTAATCATCAGATTTCGGCCAATTCGAATCCCTCCCCAGCATTTTTCCCACAATTGCCAAATAACCATCACCCTCATGGTAAATTTTTACCTATGTTAGATCCTATGTATTATTCTGCGTTCTACAACGGTTTGTTCCCACATCCGCCGCCACCACTTCCACACGCGGCTGCCGCAGCAGCAGCTGCATCCGCGGCATCTTTTTTACCGCCCGAGTTCAGTGCTTATTACAAAGAATTACTGGCCTCGTCGTCATCCTCGCAATCAAGACTGGGGATATCGGGACAGCAACATCATCACCACAATCATCATCATCATCAACCTGCGGCCCCGACATCCAAGTAG
Protein Sequence
MDKIELLGGACFSHGPYTFYKAVRIGNGRVLRLGSFFLTKLWSDADLVSIGELQLLWMDSRGPNQPLASLRLYFLPENTPDGRRDVHGEDEVLTISEKVVVRVNDLVTWLSPSLEWSWGREVSHPPTPATSPDSSPQSYQETTTTSSNSSLTQPQVLTDPGIDFSDVDKQQKDYETNLTSTRKSEDDVQTKVVVLSYPRYCRYRALLRRLEGAQPSWLCSTVAAALGGFTASPGTRVLFCRDTFDYPDLETHELLCNHLAPKLKGRPRRKRKKRSASPGESSNESEASVASTSKSGQSTGSNQILPTVGRPPLSGVRRSERNSSAEEKKFITDVQQFMNSRGSPIGKMPLLGYKQIDLFLFYTKVQTLGGYDSVTSGRLWKSIYDDIGGNTGSTSAATITRRHYERLLLPYERYQRGEETKVRLTHSRRTKNSSNSTEEVVDVKRETNSPAETSSPLPSTVTPDPTNATPTTTPTVTPPLQPILSTSTFLPGDKPKTEPATQGKTSSLRSVRVKPERLKSLNTIIANNTSPPANQQQSTQLPSSPPPSSNTSTSTPSSTPPSTMPTNAAVAGGQSVLERQLNSPLLITPQPPPPPPPPPPPSSSPPNLPVTTVTTNATTVVTLTPPPEKDMKEIKLDSKQTTLMLAQGKENIPLFEEKSITMENNNRSSRSPRSSPEVIDLEMESDTSRDKIIIPSFKKRKLEILREGGLEVTAVDLADIRPSVIQTSPAPKNDEKSQSSPLLHHTPSSSPSPGAQKLISVTVTPDIGHMLPSPQEHNHHPHHHQQSQQQQQQQQQQQQQQQQQQQQQQQQHHHHHPHHHHHHSSPRLHPVSNERKSSLQITPHNMNNSRVINLGTSNNAGLLQLYANAGVAPSNSSSSSSPSPPPAIISKLQHSNVPYQNTNHNRFVPPNGRLIPPKVTQSRSIFAHNEKMVYGNPKEILLSPSKSINPHILRSPTLSRSLHVTPQPPQQQQEPNNVGAVGGNILDLTHRGGSNEKRKDGLSTATMSVRPSLEIVRVPVVPRPNGGNNPLNLESRNGSSNNSSSSSNNNSPKFKDEKQIQPHQERRNFLGYQNILDSRTMASNNLEITLVNPTKQQKLHQINVPPTPNLTPSNSSRSNTVSMMQRRQVNGQYATRNEPSPIPPHTPRKTPSHPPVIPNVPNLNHLNNGNPFSRTAHMQQQQMSIDRRKTTDISAKEHHHHHQRKLEKDIKCLSSGPPPDARRTTSVPGYNPATNHQISANSNPSPAFFPQLPNNHHPHGKFLPMLDPMYYSAFYNGLFPHPPPPLPHAAAAAAAASAASFLPPEFSAYYKELLASSSSSQSRLGISGQQHHHHNHHHHQPAAPTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-