Gbil003125.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- ken
- Assembly
- GCA_026546565.1
- Location
- JANSWN010021790.1:2727-4658[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00029 0.016 15.8 1.7 1 23 203 226 203 226 0.96 2 13 0.049 2.8 8.8 0.8 2 23 231 252 230 252 0.95 3 13 0.089 5.1 8.0 0.3 2 19 282 299 281 304 0.92 4 13 0.016 0.92 10.3 0.7 3 23 310 330 309 330 0.97 5 13 2.4 1.4e+02 3.4 0.1 1 19 357 375 357 380 0.90 6 13 0.24 14 6.6 4.5 2 23 385 406 385 406 0.86 7 13 0.77 44 5.0 0.7 2 20 446 464 445 468 0.91 8 13 0.0003 0.017 15.8 3.2 1 23 472 494 472 494 0.98 9 13 4.2e-05 0.0024 18.4 0.6 1 23 500 522 500 522 0.98 10 13 0.00016 0.0091 16.6 1.6 1 23 528 551 528 551 0.94 11 13 0.002 0.12 13.1 2.1 1 23 557 580 557 580 0.95 12 13 3.3e-05 0.0019 18.7 1.1 2 23 588 609 587 609 0.97 13 13 0.055 3.1 8.6 0.3 1 23 615 638 615 638 0.94
Sequence Information
- Coding Sequence
- ATGTTTAATACGTGTGAGTTTGTTACATTAGAATCATTCCTTCCAAACGATGAAAAATTGAAATGTGGCGACATATACATTCACATGAACGGTACCATTTCACTGGCTTGTGGATTCTGTGAAATTGACGATTTTTACACATTGGCCGCCTACATTACCCACTTCGATTGTCACATTGCAGCCCCACAGAAAACACAATCGACAACAAATATCCAAAATGAGTCGAAAATTAGCCAGCCAACATTGGATGTATTCCCACCGGTTTCTTCAAATCATCAATTTGATGTCGATGATGATAATATTGCCCAAAAAGATCCTCTTCAATATGCAGCATTCATTTCTGTGTCAAAGCCAAGTCCCGGTAACATTCCATTGCAACGAAATATTATTAAAAGCGAGAACAATTGTATGATCAGCAAGTATATGACTGATAAGAGTAATGGAAATCAAACTTCTCATACCGTTGAGCATGTCCAAGCAGATCAGAGTTTGGAGAAAAATCTCGACAAAATCAGTCGTAATGTTTCGTTATTTGAGCATAAAACTAACGATGATTATGAAACAAAGTCTTCCATAGATAAAGATACAAAAAACCAACCCAAGGTATTCACATGTGATTACTGCAACGTAGATACGACAAGTAAACGAAATCTTCTCAAGCACATGTTTTCCATGCATTCGATTGGCCTGTCGTGTAGTTACTGCGACAAGCAACTTGCCACAAATTACTCGAAAAACGAACATGAGAAATTGCATAGAGGTGAGCCTCAAAGATTACAAACAATAAAACAGAATGGTACAATATGTAACTGCAGCGATCCACTGTGTCCAAAACATAAACTCATTTGCGATATATGTAACGCTGGCGTGACTACACAAACTCATCTTGATCGGCATAAATGGAAGGTGCATATGGTGGGCGCTGCTTGCGGATACTGCGGACGACAATTCTCATCAGAACGTGCCCGAGATTATCATCAGAAAAAGCATACAGGTGAGCCAGGAGCTATTCGAGGGAAATTAATAATCCCATGTTACTGCAATGAGCCACATTGTCCGAAACATAAATTTATTTGCGATATATGTAACGCTGGTGTGACAGCTAAAGTATTTCTGAAACAACACAAATGGAGGGAGCATCAAGTTGGCGAGACTTGCCGACACTGTGACAAAAGTTTTGCCACAAAACGTGCCTGCGATGAACACGAAAAAATACATACAGGCAAGCTTAGAGGTCCAGCCAAACGACAACAGAAACGTGAGTGTAAATACACGAAACCAGAAAGTTCGGAACAAATTCGCCAAAAATCAGCACCAGTAATTAGAGAACTATCCAAGTGTGAGCACTGTGATGATATGTATTCGACGTTACTCGAATTTCGGCAGCACTGGTGGACAGCGCACAACATTGGCTTTAAATGTAGCTTCTGCGATAAGCAATTCTATGATTCTAGCAATAAAAACACTCACGAGCTCACTCACTCGGTCAAAATGCGCTACGAGTGTCCATACTGTGAACGCTCATTTAATCAACGGACTGCGTTAAAGTTTCACATCATGGTGCATGAAGACAATCGTCCATATCTTTGTACAACGTGTGGCAAACGATTTATCACCACTACTCTACTTAAAGTGCACACAAAAAATAATCATTTGCCTGACTGTAGTTATACGTGTTCCGTGTGTAACAAAACGTTTGACAAGCCCAACAAATTAAAATTTCACAGGCAATCGGTCCACAAAGGAAATATTatcgtactaacctgtgacatttgccagcgtatgtttaatagtcgtaaggttctgactcaacatatgagactgcatactggcacaaaaccatacaaatgtcgtatttgCGATATTTATTTTGCACAAGCAGCCGGTAGAAGAGGACACGAGAGAAATAAGCACAAGGATGCCATTTTTTAA
- Protein Sequence
- MFNTCEFVTLESFLPNDEKLKCGDIYIHMNGTISLACGFCEIDDFYTLAAYITHFDCHIAAPQKTQSTTNIQNESKISQPTLDVFPPVSSNHQFDVDDDNIAQKDPLQYAAFISVSKPSPGNIPLQRNIIKSENNCMISKYMTDKSNGNQTSHTVEHVQADQSLEKNLDKISRNVSLFEHKTNDDYETKSSIDKDTKNQPKVFTCDYCNVDTTSKRNLLKHMFSMHSIGLSCSYCDKQLATNYSKNEHEKLHRGEPQRLQTIKQNGTICNCSDPLCPKHKLICDICNAGVTTQTHLDRHKWKVHMVGAACGYCGRQFSSERARDYHQKKHTGEPGAIRGKLIIPCYCNEPHCPKHKFICDICNAGVTAKVFLKQHKWREHQVGETCRHCDKSFATKRACDEHEKIHTGKLRGPAKRQQKRECKYTKPESSEQIRQKSAPVIRELSKCEHCDDMYSTLLEFRQHWWTAHNIGFKCSFCDKQFYDSSNKNTHELTHSVKMRYECPYCERSFNQRTALKFHIMVHEDNRPYLCTTCGKRFITTTLLKVHTKNNHLPDCSYTCSVCNKTFDKPNKLKFHRQSVHKGNIIVLTCDICQRMFNSRKVLTQHMRLHTGTKPYKCRICDIYFAQAAGRRGHERNKHKDAIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -