Gbil019987.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010059209.1:1-1780[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.2 5.2e+02 1.6 2.0 3 23 205 226 203 226 0.88 2 10 0.74 42 5.1 0.3 6 23 235 252 235 252 0.99 3 10 3e-07 1.7e-05 25.2 1.5 1 23 258 280 258 280 0.98 4 10 0.012 0.7 10.7 1.3 1 23 288 311 288 311 0.92 5 10 4.2e-05 0.0024 18.4 1.3 1 23 319 342 319 342 0.97 6 10 0.00079 0.045 14.4 1.7 3 23 349 370 348 370 0.92 7 10 6 3.4e+02 2.2 1.1 2 23 379 399 378 399 0.82 8 10 0.00012 0.0068 17.0 1.3 2 23 405 427 405 427 0.96 9 10 1.7e-05 0.00097 19.7 0.1 1 23 432 454 432 454 0.97 10 10 0.00017 0.0097 16.5 2.9 1 23 460 483 460 483 0.97
Sequence Information
- Coding Sequence
- TCTGCAAATGATACCGTCTCGACTGCGATTTGCACATCATGCTGGACGGTCACCCTGAATTTCCATCTATTTTGCTGCAAAGTGGTTAAAACCCAAACTGAGCTCTTTAAAGATTCATCATTCGTTAAGCATTTGACTGTTGGTTCCAGTCATATAGAAGATACGTCTACCTTAGAGCCCATCGACTGTGCAGAATATCAGCCGAAAAGCGAAACATTTGATCCAATCGATTGCAAAGTCGAACCAGATACCGATGCTTCAGTTGGCAATGCAACCGATCCACCATATCattccgatagtcagtcagatgatgatgatgatgatgatgatgatgatgatgaAAGGAAGccagaatcgatgacaccgaaacgaaagcgtaaGATCAAAGTGGAGCTAACCAAAACTGTGTGCCCCGAATCATCAGATGATAGTGAATATGACACAAAACCATTGAGTTTAACTAAAAAAGAAAAGAAACGCTCGAAACCGGCAAAACAAGCCAAACACAACGATGATTCGGACGACGAAACGTCCAGTAATAATGAAAAACCGAAGAACAAACGTAATCGAAAAATGGAAAACGAACAAATTCGGCAATTCTGCAACATGTTTTGTGATCTATGCACCACCAATTTCGAAACATTTGTCGACGCTTACAAACATTATACTGAGTGTCACGATATGAAAGGATATTTGGTGTGCTGCGATCGTAAATTGACACGTCGCAGTCGGGTCATAGATCACATTCAAATGCACTTGAATCCCGATGCATACAGATGTAAAATATGCGATAAAACATTTAGCGGCAAGTTTTCATTACGAAATCATATGGACATCCACAAATCCGAAGATCAAAAGCCGTTTCAATGTGATCAATGTCCCAGCAAGTATACCCGCTACGTATTACTGGCCAGACATAAATATCAAAGCCATTGCAAGGAAGAAGATAAAGTTTTCGTCTGTGATATGTGCCAGAAAAAATTTTTGACCAAATCGAAGTTAACGGCACACATTAAACGCGTTCATAATGCAGTGCCCGAAATCTGTGACTACTGTGGCAAGGAGTTCAAGTGCAAATACAATCTGAATGTACATCGTACCGAAGCACATATGGGTTTGGAAATCACACGACTACAATGCAACGTATGTGGTGTGTGGCTACGTGAAAACTATCTGGCCAAACACGTCAAGTCTCATAATGCCAAGGTCGAAACGTGTTCGATTTGCTCGAAAGTGCTGCAGAACAAAAAATCACTAAACAATCATATGCGCAATGTACACGGAAATCGTGTGCACCAGTGTGCCATATGTGGCAAAGCCTTTCCCAAACCTCTTTCACTCAAAgagcacatggcattgcatacgggcgaagatctgtacaagtgtccgtattgtacgaaaacgttcaaatctggagccaatatgcatggtcatcgtaagaaagcacacttcaacgaatgggaacagGACCGTGGCAAACGATTGGTCGACGGACGATACCAATAG
- Protein Sequence
- SANDTVSTAICTSCWTVTLNFHLFCCKVVKTQTELFKDSSFVKHLTVGSSHIEDTSTLEPIDCAEYQPKSETFDPIDCKVEPDTDASVGNATDPPYHSDSQSDDDDDDDDDDDERKPESMTPKRKRKIKVELTKTVCPESSDDSEYDTKPLSLTKKEKKRSKPAKQAKHNDDSDDETSSNNEKPKNKRNRKMENEQIRQFCNMFCDLCTTNFETFVDAYKHYTECHDMKGYLVCCDRKLTRRSRVIDHIQMHLNPDAYRCKICDKTFSGKFSLRNHMDIHKSEDQKPFQCDQCPSKYTRYVLLARHKYQSHCKEEDKVFVCDMCQKKFLTKSKLTAHIKRVHNAVPEICDYCGKEFKCKYNLNVHRTEAHMGLEITRLQCNVCGVWLRENYLAKHVKSHNAKVETCSICSKVLQNKKSLNNHMRNVHGNRVHQCAICGKAFPKPLSLKEHMALHTGEDLYKCPYCTKTFKSGANMHGHRKKAHFNEWEQDRGKRLVDGRYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00754072;
- 90% Identity
- -
- 80% Identity
- -