Basic Information

Insect: Gnoriste bilineata
Gene Symbol: -
Assembly: GCA_026546565.1
Location: JANSWN010029915.1:9572-11790[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0028 0.16 12.7 0.5 1 23 259 282 259 282 0.97

2 9 1.8e-06 0.0001 22.7 2.4 1 23 287 309 287 309 0.98

3 9 0.0011 0.061 14.0 1.2 1 23 393 416 393 416 0.93

4 9 0.00028 0.016 15.8 7.5 1 23 424 447 424 447 0.97

5 9 0.00081 0.046 14.4 2.1 1 23 455 478 455 478 0.97

6 9 0.0016 0.089 13.5 1.8 2 23 515 536 514 536 0.97

7 9 0.00011 0.0061 17.1 0.5 2 23 542 564 542 564 0.96

8 9 3.6e-06 0.00021 21.8 2.2 1 23 569 591 569 591 0.98

9 9 1.1e-05 0.00064 20.2 1.4 1 23 598 621 598 621 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0028	0.16	12.7	0.5	1	23	259	282	259	282	0.97
2	9	1.8e-06	0.0001	22.7	2.4	1	23	287	309	287	309	0.98
3	9	0.0011	0.061	14.0	1.2	1	23	393	416	393	416	0.93
4	9	0.00028	0.016	15.8	7.5	1	23	424	447	424	447	0.97
5	9	0.00081	0.046	14.4	2.1	1	23	455	478	455	478	0.97
6	9	0.0016	0.089	13.5	1.8	2	23	515	536	514	536	0.97
7	9	0.00011	0.0061	17.1	0.5	2	23	542	564	542	564	0.96
8	9	3.6e-06	0.00021	21.8	2.2	1	23	569	591	569	591	0.98
9	9	1.1e-05	0.00064	20.2	1.4	1	23	598	621	598	621	0.98

Sequence Information

Coding Sequence: ATGGATGCGATAGCTACATGTCACCTGTGCCTGATTAAAAGCGATGATGTGCTGGAGATATTCGGCAAGCAAGGCATCGCAAAGAGTATTGCAGCTGTGCTGAGGCAACATTTTTGGTTTGACATTTCCGAAAGTAGTAGCGTTCAGCAGCTGTGTATTTGCTACGAGTGCTGGGACAAAGTTGGCAAATTCCATGACTTCTACAAGCTTGTACAGGAAAAACATCAAACGCTCGGTACGTTGCTGCCAAAGTTCGATCATAACGATGCCAACGATAAGGAAAGTAAACAACCCGATGAACTCGCTGTGGAACATATCAAATTAGAACCAGAACAGGAAGGTGTTGATGAGATAAAAGATAATGACTATGATTGCATGGACCACGATGAAACTGAACGGATTGTTGAGAGTAGCGATAGTGATGAATCCAACGATTCTTCTTACACGGTCAAGCTAAAACCCAAACGTAACACATCCACGAAACGAACATTGCCAATACGAAAGGTTCCAGTCGAACGATGTGTCACTAAGACCGCACCAAAACTCACTAAGAGCGGACAAAATGCGTTCGATGAGCTTATCGTTAAATATATCAAAGCAAAATGTGACCAGTGTCCTGACACAAATGCACCAACCTTTAAAACCATGACAGAAATAAATGAACATTATCTTGCTGCTCATCAACAACCCGGCTACTTGATGTGCTGCGAAAAACGTCTGTCCAGTAATCAACAAATCGAGAAGCACTGTTTATGGCATAGAAATCAAAGCAAATTCAAATGTCCCGAGTGTTCCGATGGTTTTGCAAGTCGAACAAAATTGATCAAGCACAAAGATACAATGCATCCCGTTCAAACGTACAATTGTCAGCAATGTGACCGTAGCTTCAAAAAACCATATCTTCTTACCAAACATGAGCGTACCCATGATGCCGAAGATGGCGAAGCAAACAAATCCGCAGCCGAACAAACACAAACTCATGACGCTGAGACTATTCGTCGTTTCTTTGTTATGGAATGTGATATATGTATGGCACAGTTAACTTCTTACGCTGAAGCTCGTATGCATCATCGAACCGAACACAAGCAAAACGGTTACCTTATTTGCTGTAATAAGAAATACTTCAAGTTATATCGTATCATGCAGCATTGTACGTGGCACATTAATCCTGCGGCATTTAATTGCCAACTTTGTCACAAGACGTACAGTGATGGGGTCAGTTTACGCGATCACATGGTCAATTTACATGCTCGTGAAGAGGATAAAGTCTATAAATGTGAAACATGCGATAAACGATTCTCTAAAAAGCATATGCTGAGCTCTCATCATCGACTCTACCATATTCGTGACGAAGACAAAAAGTTCGAGTGTCACGTATGCGGACAACGCTTTGTGATTCTACCATTTTTGCGGCATCACATCAAACGTGTCCACGATCATGCTTTTGGTCATATCTGCGATATTTGCGCTAAATATTTCAAATGTGCTCAGTCGTACGATCTGCACTATTCCATCGAACACACAAATACTGCGCAAAAAGTACAATGTGAAAAGTGTGGCAAATGGCTGAAGCATCGCAAAACGCTAGAGAAGCATATGATGTGGCACACCGATGGTACTGAGACGTGCAAAATATGCGGTCGTGTTTCGGCAAACAAGCGTGCGTTACGTTCACATATAAAACTATTTCATACAGAACCAGCGTACCAGTGTACCGTTTGTGAAAAGAAATTCAAGAAAAAGCAGACATTAAAGgaacacatggcaatgcatgctggaatctcacatttgtatacatgcacctactgctcgaaaccttttcgttccagtgcaaatatgtatgcccatcggaaacgtgctcatcccaaggaatatgcagaAAGTAAAGCGGCTGCTAGCAGCGGACTATAG
Protein Sequence: MDAIATCHLCLIKSDDVLEIFGKQGIAKSIAAVLRQHFWFDISESSSVQQLCICYECWDKVGKFHDFYKLVQEKHQTLGTLLPKFDHNDANDKESKQPDELAVEHIKLEPEQEGVDEIKDNDYDCMDHDETERIVESSDSDESNDSSYTVKLKPKRNTSTKRTLPIRKVPVERCVTKTAPKLTKSGQNAFDELIVKYIKAKCDQCPDTNAPTFKTMTEINEHYLAAHQQPGYLMCCEKRLSSNQQIEKHCLWHRNQSKFKCPECSDGFASRTKLIKHKDTMHPVQTYNCQQCDRSFKKPYLLTKHERTHDAEDGEANKSAAEQTQTHDAETIRRFFVMECDICMAQLTSYAEARMHHRTEHKQNGYLICCNKKYFKLYRIMQHCTWHINPAAFNCQLCHKTYSDGVSLRDHMVNLHAREEDKVYKCETCDKRFSKKHMLSSHHRLYHIRDEDKKFECHVCGQRFVILPFLRHHIKRVHDHAFGHICDICAKYFKCAQSYDLHYSIEHTNTAQKVQCEKCGKWLKHRKTLEKHMMWHTDGTETCKICGRVSANKRALRSHIKLFHTEPAYQCTVCEKKFKKKQTLKEHMAMHAGISHLYTCTYCSKPFRSSANMYAHRKRAHPKEYAESKAAASSGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -