Gbil005258.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010044199.1:785-3099[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.6e-05 0.0026 18.3 0.3 2 23 93 115 93 115 0.95 2 11 4.8 2.7e+02 2.5 9.8 2 23 175 196 174 196 0.93 3 11 3.3e-05 0.0019 18.7 0.9 1 23 201 223 201 223 0.99 4 11 0.0011 0.063 14.0 2.6 1 21 229 249 229 250 0.94 5 11 3.6 2e+02 2.9 4.8 2 23 269 291 268 291 0.96 6 11 0.0099 0.57 11.0 1.7 2 23 299 321 299 321 0.96 7 11 0.00089 0.051 14.2 0.2 2 23 325 346 324 346 0.96 8 11 1.4e-06 8.1e-05 23.0 2.4 1 23 353 376 353 376 0.97 9 11 6.7e-05 0.0038 17.8 0.6 1 23 382 405 382 405 0.96 10 11 0.00023 0.013 16.1 0.7 3 23 415 435 413 435 0.97 11 11 0.01 0.58 10.9 1.2 1 23 441 464 441 464 0.97
Sequence Information
- Coding Sequence
- ATGCAAATATTCCTGAAAACAGAAACATTTTGGATGAATTTTTTAAATGCCGGTGAATTACTCGAGGACATGACCAACGTAGAATTGTCAATAAACGAACCGAATGTATTGTTCTCATCGAGTGCCGATATAGTTGATTGGGCCGAAAAGAACGAACAAATTCAAACGAATAACACAAAAACCATTGCGCTATCAATAACACCGAGGTGCCCGTTGCCATTAATAAAGCCAAAAACTAATGAAACCGATAGGAACAACACGATAAACACTATTAATGTCTGTGATTTTTGCGATAAAGCTTTCTACAGCCAGTATTTGTTGCAGTTACATGTACGCGAACAACATATAGGACCTTCTGATGACCACCACGTAAGTTCATCTCTTGACCAATTCGATGAATTCATAACGAAACGTTCGTTACCATCATCGTCCAATGCAAAAGAACTATGTAAATTATGCAACAAATGGTATGCAAATTTAAGAGGTCACAATAGAACTAAACATGGGGCTACTGAACAATGCTGTTGTCGTGTTtgtggaaaacaattcaagaatcatattcgccttaaatttcacttgaaacgacatcttgggaaacgctacgaatgcgatatttgtaaacgtagattcAGTATGCGTAGCTACATTGTAACGCATATGGAAACACACAGCAAACGCTTACGATATCAGTGCCAAAAATGTGATAAACGATTTCGAACGAGTACCGTGTACTATCAGCACAAACGATTATGTAGACTAAAGCGATATGCTAATGGCCAAATTGAAGACGAACGAATTCCAATGAAATGTGTTTTGTGTCATCGAAATTATATGACAATGCTCGGATTGCATAGCCACTATCGGAAACGTCACGAGCCCATCGAATACCAAGCCGTTTGTATGGAATGCAATCGAACGTGCAACGATATCAATGAATTGCAAACGCATCGTGAGACCTATCATCCTCAATTAATTTGTCCGATCTGCAAGAAAATTATGCGCTCCAAAGAGACATTGACCAGTCACATATTGAATCATTCGCAAAAGGAACGACCGTTTGTTTGTAAGGTCTGCGGAGTATCTTTCACTCAAAAAGCTCATCTCAGGGCACATCATAATAGTTTACATACCCGAAGTCGTCCATTCAAATGCAGTGATTGTGGATTACGGTTTGTCGAACGATTTGCATTAACGGCGCACCGAAAAGGGAAGCATACCTCAATGGCGGCCAAACcatacggatgtaatcgatgtgagctacgtttcgtttcacgttctagtttAGTCACCCACATGTACACACACACAGGCGGTGGTAGATACAAGTGCGAAAAATGTCCAATGGTCATGAGAACGTCTGCAAAGATGCAGGCACATCATGCTACCTTTCATCCGGTATAA
- Protein Sequence
- MQIFLKTETFWMNFLNAGELLEDMTNVELSINEPNVLFSSSADIVDWAEKNEQIQTNNTKTIALSITPRCPLPLIKPKTNETDRNNTINTINVCDFCDKAFYSQYLLQLHVREQHIGPSDDHHVSSSLDQFDEFITKRSLPSSSNAKELCKLCNKWYANLRGHNRTKHGATEQCCCRVCGKQFKNHIRLKFHLKRHLGKRYECDICKRRFSMRSYIVTHMETHSKRLRYQCQKCDKRFRTSTVYYQHKRLCRLKRYANGQIEDERIPMKCVLCHRNYMTMLGLHSHYRKRHEPIEYQAVCMECNRTCNDINELQTHRETYHPQLICPICKKIMRSKETLTSHILNHSQKERPFVCKVCGVSFTQKAHLRAHHNSLHTRSRPFKCSDCGLRFVERFALTAHRKGKHTSMAAKPYGCNRCELRFVSRSSLVTHMYTHTGGGRYKCEKCPMVMRTSAKMQAHHATFHPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -