Gbil010576.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010028050.1:4516-6699[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.22 12 6.7 2.0 1 23 212 235 212 235 0.93 2 11 5.1e-05 0.0029 18.2 1.2 2 23 242 263 241 263 0.96 3 11 7.3e-05 0.0041 17.7 1.0 1 23 266 288 266 288 0.97 4 11 0.00019 0.011 16.4 1.5 2 22 297 317 296 320 0.91 5 11 0.0023 0.13 12.9 3.1 1 23 345 369 345 369 0.96 6 11 6.2 3.6e+02 2.1 0.4 5 22 387 404 384 406 0.83 7 11 0.00031 0.017 15.7 0.6 1 23 409 431 409 431 0.99 8 11 0.0014 0.082 13.6 1.0 1 23 438 461 438 461 0.96 9 11 6e-06 0.00034 21.1 2.8 1 23 467 490 467 490 0.97 10 11 0.00045 0.026 15.2 0.2 1 23 496 518 496 518 0.96 11 11 0.0018 0.1 13.3 2.8 1 23 524 547 524 547 0.94
Sequence Information
- Coding Sequence
- ATGCAAGTGGCGTCACCGAACACCGAGTCAGTGCACGACTTTGAAAAGCAAACCAATTTACTATTTATTATTGGCTTGACGATGTCGAATTCTGGCTGTGCCATGGACCAGCAGTACGCCGAATACTTGCAAAAGTTGTCTCTGAATGTGGCAGACGTTTGTCGGCTCTGCGTTAATGCCAAAAACAGCATGCAGCCCATAGCTCAATTATCACAAATTGCAATTCTCTTCGAAGAAGTTATTGCCATTAAGTTCGATACTTCGAGCAGTTATCCACAACTCATATGCCAGGAATGTCAGCACGCATTGGAAACATCAGCACAACATATCAAACGTATGCGACAGGTCGACGCATTTTGGAAACGATTCCTATTCAATAATAAATCAGCCCATGATGGTGTAAATCCTTGTGCGGACCCAAATTTACCCATTGAACATATAAAAGTTGAACCAATTTATAACAATTCTGCCGATGAGGGCGGTGATATATCTGAAAATCAAACCGACAATGCAACGCGAGTCATTGAAATCGAATTGGCATTGCCAATTGATGCGCCTGCAGTACCACCAAAGAAGATCATCAACGATCGGGTCGATGAGAATGTAGTTTTCAATCATTCCATAGTAGCAACGTTCTTGTGCCATCAGTGTGGGTTAAGTCATCCGAACACTGACAGCCTTTTGCAGCACTTAAAACTTGAGCATACCAATGCGGCTGCATTAATTTGTGATTATTGTGGCAAACAATTTAATTCGAAAATAAAACTACGCAGCCATTTTCAGATGCATATGGGCTACGTTTGTACAGTGTGCCAGAAACAGTATACCTCCAAGTACAGCCTATCGGTACATGCTAAGCTTCATTTGCGTACTATTGACGATATGGTCAAGTGCGAGCTATGCCAAAAGACGTTCATCGACAAGAGTACTTATCGTGATCACGTTCGTCTCCAAAAACATAATCGCAATCATAATGTTGATGCGGGAGACATATCCGGCGGTAGTGCCGTTGGGCCATTGTTAGTGCAACCGTTTATGTGTCCGCTATGCGATGACAAATGTTTTGCACACAGTGCCACACTATCAAAACATTTGAAGCAGATGCATCCGTTCGAGGCTACCACAATGTGGCAAACATTGTTACAAACCATATGCATCAAATGCAATCAAATGTTTCCAACTGTCGAGAGTATACAGCATCACAACGAGCTGTTGCATCAGCGTTTCCAATGTGATATTTGTAAAAAATTCTTTGGCGCTGAGGAAACGCTACAGTATCATGTTCGAAGCCATTCGACACAGGAGCGACGCTTCAAATGTGATGTTTGTGGAGCTAGATTTTTGAAAAATGCCGCCCTACAGATTCACCATCGGCGAACGCATCTAAACGAACGACCACACCAGTGTCATATATGCCAGAAAAGATTTGTCAGCAATAGCGATCTCATGGGTCACATAAAAATCACACATAACAAAGAAAAAACGCACATATGTGGCGTTTGCGAGAAACCATACCCAACGGCTGGTTCGTTACGTCAGCACGAACAGAAACATAGTGGCGTATATCGGTATCGGTGTAAGCAATGCAACCAGAATTTCACCACAAGCCAGCAATTTGCAATGCACAATTTGCGTACACACAAATTGGCCAACGAAATCAATTAA
- Protein Sequence
- MQVASPNTESVHDFEKQTNLLFIIGLTMSNSGCAMDQQYAEYLQKLSLNVADVCRLCVNAKNSMQPIAQLSQIAILFEEVIAIKFDTSSSYPQLICQECQHALETSAQHIKRMRQVDAFWKRFLFNNKSAHDGVNPCADPNLPIEHIKVEPIYNNSADEGGDISENQTDNATRVIEIELALPIDAPAVPPKKIINDRVDENVVFNHSIVATFLCHQCGLSHPNTDSLLQHLKLEHTNAAALICDYCGKQFNSKIKLRSHFQMHMGYVCTVCQKQYTSKYSLSVHAKLHLRTIDDMVKCELCQKTFIDKSTYRDHVRLQKHNRNHNVDAGDISGGSAVGPLLVQPFMCPLCDDKCFAHSATLSKHLKQMHPFEATTMWQTLLQTICIKCNQMFPTVESIQHHNELLHQRFQCDICKKFFGAEETLQYHVRSHSTQERRFKCDVCGARFLKNAALQIHHRRTHLNERPHQCHICQKRFVSNSDLMGHIKITHNKEKTHICGVCEKPYPTAGSLRQHEQKHSGVYRYRCKQCNQNFTTSQQFAMHNLRTHKLANEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -