Gbil004635.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- ZFY
- Assembly
- GCA_026546565.1
- Location
- JANSWN010048042.1:537-2483[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 1 10.1 0.7 2 23 212 234 211 234 0.91 2 13 7.3 4.2e+02 1.9 0.3 3 23 239 260 237 260 0.85 3 13 0.00016 0.0091 16.6 0.1 3 23 270 291 269 291 0.97 4 13 9e-05 0.0051 17.4 1.9 2 23 298 320 297 320 0.96 5 13 0.0013 0.076 13.7 5.7 1 21 325 345 325 348 0.96 6 13 3.3e-05 0.0019 18.8 0.5 1 20 354 373 354 375 0.93 7 13 0.37 21 6.0 0.7 1 23 399 422 399 423 0.96 8 13 1.9 1.1e+02 3.8 0.7 3 23 431 452 429 452 0.85 9 13 5.5e-06 0.00031 21.2 1.3 1 23 455 477 455 477 0.97 10 13 0.00066 0.038 14.7 2.0 1 23 484 507 484 507 0.98 11 13 0.0013 0.076 13.7 0.5 1 23 513 536 513 536 0.96 12 13 0.0038 0.22 12.3 0.2 1 19 542 560 542 564 0.92 13 13 0.00065 0.037 14.7 0.4 1 23 570 593 570 593 0.97
Sequence Information
- Coding Sequence
- ATGGCACCCGTAAATAGCTATAAAAACTTGCCAATTCCCGATGGAGTTTGTCGTTTCTGTATGGTACAGACAGAAGAAATTGACCTCTCTCGGATCCCTTGGAATGAATGGCAACACTCAACATTAGCAACTATGTATGAATTGACAATGAAACAAAAGTTACCAATTTTGAAAGATTACGAAGAAGTATGTTATTGCAACGAATGTGCCGAACTTTTGTGTCAAACGGTTCATGCATTGGAAATGTTTCGCCGGTCCGACGAATTTTGGCGTAATATGGTGCTGAGTACTCGCCTTGATGATGATGAGTCAGACGAAACGGATGATCAGGTCATAGAATATTTAGATGCTGGTCACATCGATGTAATGTCCGAGAATTCATTAGACGAAAGATCTTCATCCATTGAGATAATCAATGGACATCAATCCGAACAGACAAATTTCGTTGACTTGACGGAATTCAATGATAAGTTTAAGAACGATGCAATGATGAACGATGAAAATGAATCCGATCACATAACGACCGTCAGGTCTAACGAAAACATTGACAAAACAGCCGAGCCAATAGAAAAAGAAAAGCTCAAAATTGTCTCAATCAATCGAAATTTGCAAACCATGCCCAACGTGATACTGAAATGTTTGATATGCAATGAGATATGTCCGAATAAAGCTCGACTAAATCGGCACACAATTGCAACACATAATATCGTTCAATGCATTCAATGTACTTTTACAGCTACAAATATAAAAGCTTTGAAACGTCATGAACTGAATGAACACAAACGATCAATCGATACCATATCGGCTTGCAATGAATGTGGCAAAGCTTTTCTTGATATCGCTCAGCTGACAATTCATATGAGGCGTGTTCATGGTCCGCTCGTATCATCAGAATGTCATGTTTGCAACAAAGTATTTATCACACGGTATCGACTACAGGTGCACAAAAATAGAGTGCATGCAGAACCTCGTTACGAATGCGATATATGCACGAACAAGTTTTGCACTAAAAAAAATCTCAACAGTCACATGATGTGCTTGCACGTTACGGAAGCCAATTTTATTTGTTCCATGTGTGGCAAAACATTTATGAACCAAATCAATTTGAGACATCACGAATTGAGATCATGCTCGCAATTGCCTGTAAGATCATGTTCACAAAAAACACGTTTGTATTTGGGATCAGAACGAAAATATTCGTGTAGTTTGTGTGATTTGCAAATTTCTGGCCTTACAAATGCTCGTATTCATTATCGACGGGTACATCATATTGAAGATGTTAGTACAGTGTGCCTGATTTGTAATCATTTGTCATTGTCAGCAGATGATTTAATGAAGCATCTAAAGAAAATACATTCCAATTTCGCTTGTCCATTTTGTAAGCGTTTTTTCAAGTCACAAATCTCACTGAGGAGGCACATTGCAACACATTCGTCAAAAGTTCGGCCATACGAGTGTACGGTATGCCAGGCGACATTTGTGAAAGCAAGCCATGCCGAAAACCATCATAGGCGTATTCATTTGGGTGAACGTCCATATATGTGTACCGATTGTGATCTACGCTTTGCTGAAAACGGTGATATGCTAGCCCATTGGCGTCACAAACACGATTCCAATACGAAATTCAACTGCAAATGGTGTAATAAAATATTCGCCACGATGTCGGCACTTTCATTGCACGAACCTATGCACACGGGCATCGGAAAGTATAGCTGTGAATTGTGTGATGCAAACTTTCGGTTGGGCTCACAATTACGCAAACACACGAAAATTGAGCACGAAGCATTTGATCGAGAACGATTTATCTCTATACCGTCGAATTAA
- Protein Sequence
- MAPVNSYKNLPIPDGVCRFCMVQTEEIDLSRIPWNEWQHSTLATMYELTMKQKLPILKDYEEVCYCNECAELLCQTVHALEMFRRSDEFWRNMVLSTRLDDDESDETDDQVIEYLDAGHIDVMSENSLDERSSSIEIINGHQSEQTNFVDLTEFNDKFKNDAMMNDENESDHITTVRSNENIDKTAEPIEKEKLKIVSINRNLQTMPNVILKCLICNEICPNKARLNRHTIATHNIVQCIQCTFTATNIKALKRHELNEHKRSIDTISACNECGKAFLDIAQLTIHMRRVHGPLVSSECHVCNKVFITRYRLQVHKNRVHAEPRYECDICTNKFCTKKNLNSHMMCLHVTEANFICSMCGKTFMNQINLRHHELRSCSQLPVRSCSQKTRLYLGSERKYSCSLCDLQISGLTNARIHYRRVHHIEDVSTVCLICNHLSLSADDLMKHLKKIHSNFACPFCKRFFKSQISLRRHIATHSSKVRPYECTVCQATFVKASHAENHHRRIHLGERPYMCTDCDLRFAENGDMLAHWRHKHDSNTKFNCKWCNKIFATMSALSLHEPMHTGIGKYSCELCDANFRLGSQLRKHTKIEHEAFDRERFISIPSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -