Gbil014428.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010046464.1:9529-12648[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.62 35 5.3 1.7 1 20 376 395 376 398 0.77 2 15 0.58 33 5.4 1.0 2 23 406 428 405 428 0.91 3 15 0.00011 0.0062 17.1 2.4 1 23 434 456 434 456 0.94 4 15 0.39 22 5.9 3.2 1 23 462 484 462 485 0.93 5 15 1.8e-06 0.0001 22.7 2.4 2 23 492 513 491 513 0.97 6 15 0.03 1.7 9.4 1.2 2 23 564 585 563 585 0.96 7 15 0.0021 0.12 13.1 1.3 1 23 591 613 591 613 0.98 8 15 0.00046 0.026 15.1 1.4 1 23 626 651 626 651 0.95 9 15 0.0032 0.18 12.5 3.4 1 23 658 681 658 681 0.97 10 15 0.002 0.11 13.1 0.6 2 23 686 708 685 708 0.95 11 15 0.016 0.94 10.3 3.0 2 23 748 770 747 770 0.95 12 15 0.017 0.97 10.2 2.2 1 23 776 798 776 798 0.98 13 15 3.4e-05 0.0019 18.7 2.3 1 23 804 826 804 826 0.99 14 15 1.1e-05 0.00064 20.2 1.8 1 23 832 854 832 854 0.99 15 15 8e-06 0.00046 20.7 0.1 1 23 860 883 860 883 0.97
Sequence Information
- Coding Sequence
- ATGAGCAATAGAGATATCTCAAATCGTTTGGAAATTGTTGAGTGCATATGCTGTAAAACTACTATCCAAAATATCACGGAAGATAATTACGTTTATGATGAAGACGGAAAACCCAATGTTATTCAAGAGCTGTTATTAGATTGCTTGGGAACGCAATTGGAAGTTGATGATAACCTCAGACTTGCTGTTTGTAATCCTTGCTCTAACCAACTCCATCAAAGTTACTTGTTCAAGCAAATGTGCATCAAAACCACAAAAAATAAAAGTGAAGTTGATTTATATGAAAATCCTGAAAGTGTCGGTAACACTGAAGAAGTAGATGCGGCTAGTATCGATGAAAAAAGTCTTGGCGAAACTATCGAATTTGTAGAAGATGATGCTGAATACCTCGACGAGATGGCGGTAGCTGACTACCAAACAGTTGATGATGTTGTATTAGGCGACTGTCTCACCGCCGATAGTTACAAGCAAAAGTTTCGTCAACTTGTTCCTACACACCTAAGCTGCGATATGAAGCGAGAAGTGTCGTCAATCATCAAATCAGAAACGGAGTCAAATGGACTAGAATGTACGAGTTTGGATGTTGAAAAAATCGCTACTTCCGATGATTTGATAAAAATCTTGGAGGACGATTATCACAGTGAAAATGATACAACCCGTAAGCGATTAGACAAATACATGGACGCACACGAGTTTATGATACCCAAAATTGAAGTATGGGACGTATGTGAGGATGTTGAATATCTCGATGAAGAAAAACCAGTCGATATTGACGAATACTTAATGTCTATTTCTTCTACGTTCCATAACGAAATGATGCCATTTTCTGTTATGACCGTTTGTAATATTTGCGAGGAATTCAAAATTGAAAGTTATTCGGCTCTCGTAAAACATGTTGTGAAGAAGCATCAGCGTTTGGGCAGATTGGATTGCTGTCTGTGTTCGAGCCCATCTTTCGAAAATGTCACTGATTTGAAGAATCATCTCTTTGTTGACCACGGAGACCTCGTCAATCCGACTATAATACTGACATGCCAGACCTGCGATTGTGTGTTCAATTCAGTGGTTAAATTTGGAAAGCATTGTTGTAAGCAGGAGGAAATATATTCGGCTATCGGCGAGAACTTCACTTGCCCTATATGCGATAAGCAACTAATTTCAAAAAAGAGATTTTTATTTCACCGGCAGTTCCATCTGAATGCACCGCGACCAAAAGTTTGTTTGGTGTGCCAAATTTCCTTCGAGGATGAACATAAATTCTACGAGCACGTCAATTTCTCGCACGAACTATTCCCACAACACTTCTGTAAGTACTGCGACAAAAGTTTCACCACAGAATGGGAATGGAGGAGACATGAAAACGGTCATACGGCTGTCAGGAATTACGATTGTCATAGCTGTGGAAAATTGTTTCTAAACAAGCAAACTCTCAATGAACATGAGGTGTCCCATCACCTACCTGAAACCCATTTGAAATGCGACATCTGTTCGAAAACATTCAGCCGAAAATCTCGCCTACGCAAACATTTGCTTATGCATCAAGTGTATCATCCGCACATTTTGCCAATGTGTGGCGAGTGCCATCAAATATTCGAGAATGATGAAATTGGTCTGCATCATTTGGAATTCGTTCACGGAGCAAACTCTGATAAATTGGTGCTCGATTATGATAATTTCGATCGTGTTCTTTGCTGTGAGTTCTGTGAAATTGCCTTTCACGACGCCCAGGCATTGGTTGCCCACAAAAAGACACACACAGATGCTTTGAAATATGAGTGCAGCCATTGCCCAGCCAAATACGACCAGTACGGAAAACTACGAACTCACTTAACGGTGCACAAACACATTAAGGGCGATTATCCGGTACAGCGATTGTACATGTGCGACGAAGAATCGTGTCTAAAACCTTTCAAAGATTGGAAACATCTACAGTCACATCGTAAGACCGTGCACCtcataaatccgacaattttcaagtgtcatgaatgtgatgaaatcttctaccaaagctggacattttcCTACCACAAGAAAAGTGTACACGCCGAACATCTGCGATGTCCGTTCTGTGACCAAACTTTTGTGTTGACAAAGAGCTTGCAGAACCACGTCAGCCGCTTACATGTCAACGACAGTCAACCACAATCGGAGATGCACTCAGCATCTATGACGGTCACAAAACCCGAGCCGCAGGCCTTCGACTTTGAAAAATTCGTTGTTGTGAAGACGGACGGTTTCTGGTATTGCCGAGAATGCGACAAGAAATGTAGCACCCGCCACAATGCCGCCACTCACGTGCAAATGGTCCATTTAAAGGTAAAGAATTTCCACTGCAAAACGTGCAACAAAGGTTTCTTCATGCGAAGAGATTGGGCGGATCATGTGCGAATTCACACGTCTGAGATGCCATTCGAGTGTTCGTATTGTGAATATAAGACGCGCAAAAAATCAATGCTGCAGGATCACATTAGaacacacacgaatgaacggccatacgaatgcgaaatttgtcagcgatcattcaaacgacgctacgtattaaatatgcatttaaagcgacatacaggcACCAGACTATTCTCTTGTCCACAGTGCGGCAAAGAATACATAACTCAGGCTGCTCTTAACGCGCATGTGAAGAGAACTCACGAGAAAATAGAAAATTTGATCTTAGAAAGGAAACGCAAAGCATTACCGACTGCTATAAGGGACAAATTCATGCCAAAATTAATAATTGTTATGCCTGGACCTGTTACAAAGGCACAGCTATAA
- Protein Sequence
- MSNRDISNRLEIVECICCKTTIQNITEDNYVYDEDGKPNVIQELLLDCLGTQLEVDDNLRLAVCNPCSNQLHQSYLFKQMCIKTTKNKSEVDLYENPESVGNTEEVDAASIDEKSLGETIEFVEDDAEYLDEMAVADYQTVDDVVLGDCLTADSYKQKFRQLVPTHLSCDMKREVSSIIKSETESNGLECTSLDVEKIATSDDLIKILEDDYHSENDTTRKRLDKYMDAHEFMIPKIEVWDVCEDVEYLDEEKPVDIDEYLMSISSTFHNEMMPFSVMTVCNICEEFKIESYSALVKHVVKKHQRLGRLDCCLCSSPSFENVTDLKNHLFVDHGDLVNPTIILTCQTCDCVFNSVVKFGKHCCKQEEIYSAIGENFTCPICDKQLISKKRFLFHRQFHLNAPRPKVCLVCQISFEDEHKFYEHVNFSHELFPQHFCKYCDKSFTTEWEWRRHENGHTAVRNYDCHSCGKLFLNKQTLNEHEVSHHLPETHLKCDICSKTFSRKSRLRKHLLMHQVYHPHILPMCGECHQIFENDEIGLHHLEFVHGANSDKLVLDYDNFDRVLCCEFCEIAFHDAQALVAHKKTHTDALKYECSHCPAKYDQYGKLRTHLTVHKHIKGDYPVQRLYMCDEESCLKPFKDWKHLQSHRKTVHLINPTIFKCHECDEIFYQSWTFSYHKKSVHAEHLRCPFCDQTFVLTKSLQNHVSRLHVNDSQPQSEMHSASMTVTKPEPQAFDFEKFVVVKTDGFWYCRECDKKCSTRHNAATHVQMVHLKVKNFHCKTCNKGFFMRRDWADHVRIHTSEMPFECSYCEYKTRKKSMLQDHIRTHTNERPYECEICQRSFKRRYVLNMHLKRHTGTRLFSCPQCGKEYITQAALNAHVKRTHEKIENLILERKRKALPTAIRDKFMPKLIIVMPGPVTKAQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -