Gbil004968.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010018597.1:1901-4744[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00033 0.019 15.6 0.6 1 23 154 179 154 179 0.97 2 16 0.00058 0.033 14.8 0.1 2 23 228 251 227 251 0.94 3 16 0.00051 0.029 15.0 2.4 1 23 263 286 263 286 0.97 4 16 0.00025 0.014 16.0 0.8 1 23 292 314 292 314 0.97 5 16 0.0009 0.051 14.2 3.6 1 23 321 343 321 343 0.95 6 16 9.8e-05 0.0056 17.3 0.5 1 21 349 369 349 370 0.94 7 16 0.18 10 7.0 0.3 1 23 375 397 375 397 0.96 8 16 0.00048 0.027 15.1 2.8 1 23 402 424 402 424 0.97 9 16 0.00049 0.028 15.1 1.3 1 23 430 452 430 452 0.98 10 16 2.3 1.3e+02 3.5 0.3 2 19 458 475 457 480 0.77 11 16 4.4 2.5e+02 2.6 5.9 1 23 486 508 486 508 0.95 12 16 0.00084 0.048 14.3 0.6 1 23 518 540 518 540 0.98 13 16 0.02 1.1 10.0 1.0 1 23 580 603 580 603 0.92 14 16 0.0061 0.35 11.6 0.1 1 23 608 632 608 632 0.89 15 16 0.0003 0.017 15.7 1.3 3 23 654 676 653 676 0.94 16 16 0.54 31 5.5 0.4 1 21 681 701 681 702 0.94
Sequence Information
- Coding Sequence
- ATGAACAACTATGATCCCAACTACATTAATCAGTTTTACGATCGAAATTTCACGGACAATGCTAACGACGTCAATTATCGGTTGTCCATCGCAGCTCAGCAATATTCGTGCACTCAGCAGCCTGTGTTCATTACGTCCTCTGACAATAGCTTCGACAATGTCAATCATCAGGAAACATCGACCACCGAATGGAGTACTGTTCCGTACCATGGCGAGCTACAACCATTGCATACGTTTCAAACGATGCAGGACACGAGCCATTATTTGGAAGGTTTATCCAGCCTGATATCGTTGGACCACATTAGCAATGCTGTTGAACCCAGTGAACCCTCAATTGGGACGATTAAAAACGATGTCAATTCGACGAATTCAGCAACGGTCGCTTACAATATTGCTGATGATTTGATGAAACCGCTGCTACACGCAATCCCCGTCGAATCTAATTCCAGCACAGCTCAGTTTTCTTGTAAAGAATTGGACTGCGCAAAATCGTACTCGACCATTTCAGGACTCAATAATCATATCAAAAAGAAACATTCTGGTCTATCATTGTATCCATGCGACGAGTGTGCAGACACTTTTAACGCTACACACGAACGAACCATGCATAAAATTCAACAGCACGAAGGACGGCGCTATCAAACGTCACGACACAAAAAAACAAATGTTGTTTCCAAGTTGAAATGTCCTGAGCTTGATTGCGGCAAAGAATTCAGCAAAATTGTTAGCCTAAACAAACACAGTGCCGTACACAATATAATAAAACCAACAGAGGAGCGCATCACCCACAAGTGTACGACCTGCGACGATGTGTTCAATCAAAAAGGTGATCTTGTACGACACACGCGAAATCGGCACACAGGCACCGGTGAATATCCTTGTCCCGAGTGTAGTAAAGTTTTTTACACTTTCGATATGTACAAGGAGCACCGAAGTCTACACGACGATACCATACCCAAGCATACGTGCAACGAGTGCGGTAAGCAGTTCATTTCACATCGGAAGCTTAAAGAACACTCCATCATCCATAAGGAACGTGTAATGTTCAAGTGTGACGTGTGCTCGAAGGTGTTTGTTCGCAGTCAGACACTACAATACCATCGGATCACTTGCAAAGCAGCATTCTCGTGTGACAAGTGCGTGGATAGCTTCATGACGATCGCTGCCCTAGAAAAGCATCAATCATTTCACAAAACTGAAAGTTTTGCATGCGTAAAATGTAACAAAGTATTTCATACCCGAAATGCATTGACCAATCACGAGAAACGCCATTCGTTGCGTATGAATTATACGTGTCAAATTTGCAAAGAAACCATTTCAACTAGAGCCAAGTTTCAGAAGCACATTAAGGATCATTTAGAGTATCAGCTCAAGTGCTCCGTGTGCAACGAAGAATTTCAAAGTCTTGTCAAGTACGGCTACCACAAGGCTGAAATGCATTCTATTATGAGACCGTACGACTGTGTTTTGTGCTCTGATCAATTTTGTACCCGACACGAGCTTTTCGTGCATCTCCACAATCATATTGATGTCCATACCAGTAGCAGCTCATTTACATGCGAACTGTGTGGTATAAATTTCTCGATCAAAGCTACTTACGAACAACATACGAAATCTCATGCAAAAGATTTGCTCGTCGTTAAGCCTACCGATAACGATACTGATGGTATATCTACTGATGAAGACGACATGAACGATGATCAGTCTGGTGATGCGTCGTCAACAAAAACCATTTCTTTTCCGTGCATCATGTGCTCGGCTACATTTGCGTTTCAGTCGCTATTAAATCATCATCGTAGCACTGTACACGAAGTAAAGCGGTTTCCGTGTCTCATTGATTTTTGCGATCAAGTGTTTGATACGCGTGCTGAACTGGAACGTCACGAAAGTGGACATGAGACTGCGCCAAGTATTGTTACCGCACTCACTTCAGCCAGCAGTGATCCAAACGATGTGGCATGCACGCACGTCGGCTGTGGCCTTGTTTTCGCGAGTCAACATTTGCTGCGACGTCATCAGTCGATACATCGGCTGCAGTCGTACCGATGTACGGCTTGCGGCCGTCAGTATCACTCGGAGGGTGTGTACCGAACGCATGTACGACTATGTCAACCGGTGACTGATGACGTGGTGCTCGTAGCCGATGAAGATATCGATTCGGGACCAGTTCTATGCAAGGTTTGCAATCAGCTATTTGAGAACCGAAAAGTATTAAAATTTCATCGTAAATTTTGTGCCGACGATGAGGCAGATGAAGAGGAACGACGTCGTGGTATTGCATTGCGTGAAAGCTGTGGTTTTTTAGCGATAAACGCGATGGGTGATGGAGAACAAAACATCGAAGAAGTATATGTGAAGGAGGAAGAAGTTGACGACGATAATCATGATAATTTAGTGTCTGAATGTTAA
- Protein Sequence
- MNNYDPNYINQFYDRNFTDNANDVNYRLSIAAQQYSCTQQPVFITSSDNSFDNVNHQETSTTEWSTVPYHGELQPLHTFQTMQDTSHYLEGLSSLISLDHISNAVEPSEPSIGTIKNDVNSTNSATVAYNIADDLMKPLLHAIPVESNSSTAQFSCKELDCAKSYSTISGLNNHIKKKHSGLSLYPCDECADTFNATHERTMHKIQQHEGRRYQTSRHKKTNVVSKLKCPELDCGKEFSKIVSLNKHSAVHNIIKPTEERITHKCTTCDDVFNQKGDLVRHTRNRHTGTGEYPCPECSKVFYTFDMYKEHRSLHDDTIPKHTCNECGKQFISHRKLKEHSIIHKERVMFKCDVCSKVFVRSQTLQYHRITCKAAFSCDKCVDSFMTIAALEKHQSFHKTESFACVKCNKVFHTRNALTNHEKRHSLRMNYTCQICKETISTRAKFQKHIKDHLEYQLKCSVCNEEFQSLVKYGYHKAEMHSIMRPYDCVLCSDQFCTRHELFVHLHNHIDVHTSSSSFTCELCGINFSIKATYEQHTKSHAKDLLVVKPTDNDTDGISTDEDDMNDDQSGDASSTKTISFPCIMCSATFAFQSLLNHHRSTVHEVKRFPCLIDFCDQVFDTRAELERHESGHETAPSIVTALTSASSDPNDVACTHVGCGLVFASQHLLRRHQSIHRLQSYRCTACGRQYHSEGVYRTHVRLCQPVTDDVVLVADEDIDSGPVLCKVCNQLFENRKVLKFHRKFCADDEADEEERRRGIALRESCGFLAINAMGDGEQNIEEVYVKEEEVDDDNHDNLVSEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -