Gbil010034.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010010666.1:1742-4259[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00042 0.024 15.3 0.6 1 23 338 361 338 361 0.93 2 14 0.005 0.28 11.9 5.3 3 23 368 389 367 389 0.95 3 14 0.00025 0.014 16.0 0.4 1 23 396 418 396 418 0.98 4 14 0.00085 0.048 14.3 1.1 2 23 427 449 427 449 0.95 5 14 8.1e-05 0.0046 17.5 0.2 2 23 456 477 455 477 0.97 6 14 9.2e-05 0.0052 17.4 1.5 3 23 484 505 483 505 0.97 7 14 0.097 5.5 7.8 0.9 1 19 511 529 511 532 0.80 8 14 0.25 14 6.5 0.5 2 23 552 574 551 574 0.94 9 14 0.03 1.7 9.4 0.2 2 23 582 604 579 604 0.95 10 14 0.3 17 6.3 1.7 2 23 608 629 607 629 0.95 11 14 0.00059 0.034 14.8 2.4 1 23 636 659 636 659 0.98 12 14 0.0099 0.57 11.0 0.3 1 21 665 687 665 690 0.95 13 14 0.00021 0.012 16.2 1.0 1 23 698 720 698 720 0.96 14 14 3.6e-05 0.002 18.6 0.7 1 23 726 749 726 749 0.91
Sequence Information
- Coding Sequence
- ATGCGCTGTTCAATAGTCGGCTGTGGAAAACGACTCAAAATCAATGGTGAAGTACAATCGGGCCATTACAGATTTCCAAAGGATAAAGAATTACGTGATTTGTGGATCGATCTCAGTCAATGGCGAAATGGATCGAATGTATTGAACTCTCGTGtgtgtggcaaacatttcaccgcagatgatttcaagaaaagtggtggatcacacaaatacCTTAGGTCAAACGCTGTGCCAACGTTGTTTTTGCCACCAGAAAGTACAAAACATCCTTACATACTAGCTCGTCGCAAACGTGAGTGCGCATGGGATGGTCCATCCGAATCGCAGATATCCTCCACGGTATATCCAATAGCTCAATTGCCGTCTTCCATTGACAACAACAGCAGTCCAAGCACCTCAAAATGTAAATCATCAGTTATTGAGTCCATAGACAAAAAGGTGAATGAAAACATTGTCGTCGATGTTGAACGCATATGTCGATTTTGCTTATCTGAAAGTAACACTGACGATACCGTCGTACGCATTGCTTGGAACGATTGGGAGTATTCTGAACTTACGGATCTTTACGAGCAAATTACAAACTTGAAGCTACAAATATCAGCAAAATGCTCGGAGCTATGTTGCACCAGCTGTAGGCGACGTTTACACGATACAGTCCAATCAATACAACTCTTCCGGGTAGCCGATAAATTTTGGCAAGATCACTTGAACACACAGCAACGAAATTTTGAAGAAATCATACAAATCGAACCAATTGAAGAAGTAAAAATTGAAGAGCTCGATTATGAGGATGATAATTATACGGCCGATTTGTTGGACAATATAGCCGAAAATGTATTTCTTGTTCAAGAACCAATTAATGTCGTTGACGATGTTACAAAGTTGGAATTAATCAATGTTGAGACGAGCAAAGATGATCAAACGAATGAAGCTAAAGAGCAGCCAAAGACCAAGGAAATCTTTAAAGTTCCTCGTATACCAGCTAAGGTGGTGGAAGTGAGTAAACCTATTTTCGATTGTAACCAGTGCGATAAAGTGTACAAAACTCTCCGAGGACTAAACGAACATAAGAATGCCCAACACGAAACAATGGATGCTCACTGTAAACTTTGTGACAAAAAAATGTCGACCGCATACAATTTAAGGAAGCATATGCTACACTCACATGGACCACAATCGAAGACATACGATTGTGATGTTTGCGGAAAGGTGCTGAAATGCCCTGCAAATTTAAGGCTTCACCAACGAATTCATAATCGTTCATTAGATACGATGGCATCGTGTGATCAATGCAGTAAAGTGTTTCGTGATCCGCATCTAGTACGCGTCCATAAGCGTCTTATTCATGGTCCATTCGTAGCTTCAATGTGCAGTGAATGCGGTAAAGTGTTGCGCAACAGTACACGACTCGCCGTACACATGCTGACGCATAATCCTGTGAAACCAATGTGCGAACACTGTCAGACCACATTTTCAAGTAAAAAAAGCATCATCGTTCACATGCGAGTGGTACACAAGCAAGGCGTACCGCACATATGTGATCAATGCGGCAAAGTATTTCAACACACGAGCATGGGACGAAAGCACAGTAAAGTGTGTACCGGTGCAAATACAATTTCAGCCCCCAGCAGGGAACGTTCTCACATCACAGTCAAGTGTTTGTTGTGCTCACAGTTATACACGAATTTAGGTACATTACAAGACCATTATGATAAACGTCACGATCCAGTTCAATGTGAATCGGTTTGTATGCAATGCAATCAATTGTTTGCGTCTCCTGAGGCTCTAGCAGAACATAAACAAACGGTTCACGAAAATCTACGTTGTACTGTGTGCAAAAAGTATTGTCTCAGTGAGACTAGCCTTCGAATTCACATGGAAGGACATGTCGATGGTAAACAACGTTTCGAATGCAAAATTTGTGGCGGCTCTTATGCTCGATTTGAGTATCTCAAATTGCACCATCGACGTCGACACACCACTGATCGACCTTTCAAATGCGGAGAGCCAGGTTGCGGTTTAGCGTTCGTTGAGAATGGCGATTTGTTGCAGCATCAACGATGTCGTCATGCACCTGAATCTGAGCGACCTCATGCATGCGATGTATGCGGTAAACGTTTTACAATCGCTTCGATACTACGACGCCATATGACCAAACATACAGGAATTGGTGTCCACAATTGCGACGATTGTGGTGAGAACTTTCGGTATGCTTATCATCTCAAAGCTCACGTCATAGCTGCACATCCAAGGACTTGA
- Protein Sequence
- MRCSIVGCGKRLKINGEVQSGHYRFPKDKELRDLWIDLSQWRNGSNVLNSRVCGKHFTADDFKKSGGSHKYLRSNAVPTLFLPPESTKHPYILARRKRECAWDGPSESQISSTVYPIAQLPSSIDNNSSPSTSKCKSSVIESIDKKVNENIVVDVERICRFCLSESNTDDTVVRIAWNDWEYSELTDLYEQITNLKLQISAKCSELCCTSCRRRLHDTVQSIQLFRVADKFWQDHLNTQQRNFEEIIQIEPIEEVKIEELDYEDDNYTADLLDNIAENVFLVQEPINVVDDVTKLELINVETSKDDQTNEAKEQPKTKEIFKVPRIPAKVVEVSKPIFDCNQCDKVYKTLRGLNEHKNAQHETMDAHCKLCDKKMSTAYNLRKHMLHSHGPQSKTYDCDVCGKVLKCPANLRLHQRIHNRSLDTMASCDQCSKVFRDPHLVRVHKRLIHGPFVASMCSECGKVLRNSTRLAVHMLTHNPVKPMCEHCQTTFSSKKSIIVHMRVVHKQGVPHICDQCGKVFQHTSMGRKHSKVCTGANTISAPSRERSHITVKCLLCSQLYTNLGTLQDHYDKRHDPVQCESVCMQCNQLFASPEALAEHKQTVHENLRCTVCKKYCLSETSLRIHMEGHVDGKQRFECKICGGSYARFEYLKLHHRRRHTTDRPFKCGEPGCGLAFVENGDLLQHQRCRHAPESERPHACDVCGKRFTIASILRRHMTKHTGIGVHNCDDCGENFRYAYHLKAHVIAAHPRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00753797;
- 90% Identity
- iTF_00753797;
- 80% Identity
- iTF_00753797;