Gbil012708.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010013807.1:4264-6982[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.026 1.5 9.6 0.4 1 23 198 223 198 223 0.96 2 14 0.00098 0.056 14.1 3.0 2 23 229 250 228 250 0.96 3 14 0.047 2.7 8.8 2.3 3 23 255 276 253 276 0.93 4 14 3.7e-05 0.0021 18.6 1.5 1 23 282 305 282 305 0.97 5 14 2.7e-05 0.0015 19.0 1.2 2 23 312 333 311 333 0.96 6 14 0.0035 0.2 12.4 2.4 1 23 340 362 340 362 0.98 7 14 9.6e-05 0.0055 17.3 0.4 1 23 368 390 368 390 0.96 8 14 0.025 1.4 9.7 2.1 2 23 410 432 409 433 0.95 9 14 0.01 0.57 10.9 2.5 2 23 447 468 446 468 0.97 10 14 0.0058 0.33 11.7 1.0 3 23 473 493 471 493 0.96 11 14 8e-07 4.6e-05 23.8 2.3 1 23 500 523 500 523 0.98 12 14 0.0075 0.43 11.3 1.6 1 23 529 552 529 552 0.93 13 14 2.9e-06 0.00017 22.1 1.5 1 23 558 580 558 580 0.98 14 14 0.0002 0.011 16.3 0.4 1 21 586 606 586 607 0.95
Sequence Information
- Coding Sequence
- ATGCGACGAGTATCATTGCTGGAACTGCAACGCTCCAAGATTCCTAAATATTATGAGGAAGTCACCATGCTAAAGTTAGACTTGTCGTCAGTTGACTATCCGGAGCTATTGTGCAAGAAATGCGAGCGAAATATGCAACTGGCCGCTAAGATACGACGAGATCTGCTGGTTGTTGATGAGTTTTGGAAGAAATTCTTACAGAAGCATGGTAGTGTACATATCATCAAAGAGGATGATGCCAATCAGAACAACGCACAAACAAACAATACTTTTAAAGTGGAATCACAATCTTCTTGTCCACCACCACCTGTCGATAGCATTTTTCGTCAAGCCAAAGTTATGATTGAGCGACTACCATCAGCAACTCCTTTACCAATAGAAGAAGTTAAAGTGGAACCGTACGagctgaacatctccgacaacgaccattatgatgattttaatgatgataatgacgatgatgacgatgctgatgatgatgatggatcggcacttgaagaagatcgactagatcttgaaacaaacgatGACGAGTCTCTGGCAGTATTTAAGTACCATGGAGTGAAACCTATGTCAGGTGAACTGAAGCAGTTCAAGTGCTCGCAGGCTGAGTGTGAAAATGAATTTGATGACATGCACGATCTGAACGACCATATGTACGTCGAGCATTCGATAAAACAATTATCATGCGATGATTGTAATCATATATTCCAACGCAAAGGCGAACTGAGACATCACGTCAAGGAACACATTGTCAAATCGTGTGGTGCCTGCAACAAGAATTTTGCTTCCATTGCCTGCTACAAAAAACATATGAAAGAGTTTCACGAGAACACACGAATCTACAAGTGTGATCAGTGCGAAAAAACACTTAAAACGGCTGGCTCATTCCGCAAGCACATGCAGCTCACGCACTCTGGTTACTTGAATTTGATTTGTTACATATGCGGCAAACCGTACAAAAATCATCAGTACCTACGGCGACACCTACAGATTCACGAAGAGAAGACAAAGTCGTTCAAATGTTCGTACTGCCCGAAACAATTCGAGCTCAAGTATTCGAAAAAACTTCACGAGCGTGTTCATACCGGGGAACGACCGTACATGTGCGATACTTGCGGTTCATCGTTTACACAACGCGGCCTCTTGGCACGTCACAAACTATTACATCTGAAACCGGCTCGAGAAAAAGCGCCCAGACGCATCAATACCGAGCACGGTAATCTCAAGTGTGATCTATGCGATTCGATTTTCTCCAGCATGGCCAGCATGCGAAGCCATCTCAAGAAGAAACATCATCAACAAAAATCAGCCATTTGGGATTACAAGCTGACCACGACCTGCATGAAGTGTCACGAAACGTTTCTCGATCCAGTCGAACTGAACAAACACAAAAAAACGCATCGCAAATTTGGCTGCGACATATGCAAGCAGCGCTTCAGCAATGAAAAAACCCTCGACATTCATATCGCTCATCACGCCAACAAAGAGAGACCATTCAAATGTGACGAATGTGGCGCTGCATATACCCGTAAATCACATCTGCAACAACACTATCGTAGCATGCACACCAGCATTCGGCCGCACATTTGTATGTTTTGCAGCAAGGGCTACTCGGAAGCGTATCAGCTAAAACAACACATCAAATTCGTGCACAATAAGGAGCGACCGTATCAATGTCAGCACTGTGATAAAGCATTTTCAACGGCTATACAGCTCGGTCAGCACATGCAATATCATACGGGCAATTTTCGGTACCAGTGTCCGGTGTGCGAAAAATGTTTCATCACTGGCCAAGCTCTAACCAAGCATGGTCGCAACAGTAAATCGTGTCGCGAGAAAAATCCTGACCTCACAAAGACACGTACATGTAAGCGATTGCTACAACCACCGCCGCCACCTCATATGTTGGTACCTGCCGAGCAACTTCGATTGCCTGTAATACCAGTGCCGGTAGAGGTGAGCGTAGCCGAGTCTACGAAATCATCGGTTGTTGTGGTGCGGTCAGAGCCAGGTTCATATCACCATCAACAAACCAATAAAACGCTAATTTTGACTACGCCATCTGATATTGTAGCAGCTAAAAAGAACGTTTGTCAGCAACAAAACTCTTCGTCTGGTAAAATTCATTTGATTGGCGATGTTGGAGCAGCGCGTGAACTAGATTCGCCTACCGCCCAGCAACTTTTGATAAGTGATCGCCAACAGCTGCATCATCAAACGCAAATGATTCAGCAACAAAATAATCATATTCAGCAGCAACAATTCCAGCAGCAGCACCAACAAACTGTTCAGCATTTACAAATACAGCAACCATTGCAAATTTTACAATCAACCCAATCGACGATCTATACGCCCGATCCATCGAAACCGAATGCAATACAAATCATATTTCCTTATTTGAAAAATCGAAATATTTAA
- Protein Sequence
- MRRVSLLELQRSKIPKYYEEVTMLKLDLSSVDYPELLCKKCERNMQLAAKIRRDLLVVDEFWKKFLQKHGSVHIIKEDDANQNNAQTNNTFKVESQSSCPPPPVDSIFRQAKVMIERLPSATPLPIEEVKVEPYELNISDNDHYDDFNDDNDDDDDADDDDGSALEEDRLDLETNDDESLAVFKYHGVKPMSGELKQFKCSQAECENEFDDMHDLNDHMYVEHSIKQLSCDDCNHIFQRKGELRHHVKEHIVKSCGACNKNFASIACYKKHMKEFHENTRIYKCDQCEKTLKTAGSFRKHMQLTHSGYLNLICYICGKPYKNHQYLRRHLQIHEEKTKSFKCSYCPKQFELKYSKKLHERVHTGERPYMCDTCGSSFTQRGLLARHKLLHLKPAREKAPRRINTEHGNLKCDLCDSIFSSMASMRSHLKKKHHQQKSAIWDYKLTTTCMKCHETFLDPVELNKHKKTHRKFGCDICKQRFSNEKTLDIHIAHHANKERPFKCDECGAAYTRKSHLQQHYRSMHTSIRPHICMFCSKGYSEAYQLKQHIKFVHNKERPYQCQHCDKAFSTAIQLGQHMQYHTGNFRYQCPVCEKCFITGQALTKHGRNSKSCREKNPDLTKTRTCKRLLQPPPPPHMLVPAEQLRLPVIPVPVEVSVAESTKSSVVVVRSEPGSYHHQQTNKTLILTTPSDIVAAKKNVCQQQNSSSGKIHLIGDVGAARELDSPTAQQLLISDRQQLHHQTQMIQQQNNHIQQQQFQQQHQQTVQHLQIQQPLQILQSTQSTIYTPDPSKPNAIQIIFPYLKNRNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -