Gbil020350.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010023561.1:804-4595[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 1.1 10.1 1.9 1 23 282 304 282 305 0.95 2 12 0.12 6.8 7.5 2.8 1 22 309 330 309 333 0.91 3 12 0.0002 0.012 16.3 0.1 3 23 450 471 449 471 0.93 4 12 0.0014 0.081 13.6 1.1 1 21 491 511 491 514 0.88 5 12 6.9e-06 0.00039 20.9 1.6 1 23 520 542 520 542 0.98 6 12 1.3e-05 0.00074 20.0 0.2 1 23 548 570 548 570 0.97 7 12 0.0001 0.0057 17.2 3.8 1 23 576 598 576 598 0.97 8 12 5.1e-08 2.9e-06 27.6 0.4 1 23 604 626 604 626 0.98 9 12 0.00026 0.015 15.9 7.5 1 23 632 654 632 654 0.99 10 12 0.43 24 5.8 3.8 1 23 660 682 660 682 0.94 11 12 1.7e-05 0.00098 19.6 0.2 1 23 688 710 688 710 0.97 12 12 8.6e-06 0.00049 20.6 6.8 1 23 716 738 716 738 0.98
Sequence Information
- Coding Sequence
- ATGGCCGAGTTGGAGTACGACGAACAATTTTGTTTATATAATTCGCAAGTCTGTCGGCTGTGTTGTGTAGAGAATGCGAACGGTAGCATGTTGTACATGGGCGAGGAGGAAGACATTAGCTTCCTAATCAATTCCTACTTGCCGATCAAGATCTCAAATGACAGAAGGCATCCTCGCTGGATATGTCCTGGATGCCATCTGCAGGTGGAAGCAACTGTGGAGTTCTTTGATCTCGTGATCAATGGGCAGGATAAGCTACGCGCTCTCTTAAAGTTGCAAAAGTCTACTGTGGATGACTTGGAAGCTGAAAATACTGCACAGATGGAGGATGCAACAGCCGCTGAAAACGTCATGACCGAAGGATTGTTTAACGGTGAACATGAACTACGCTATCGCATGGATGGCATTGAAAAGCCAAAAAAGAAACGCGGTCGACCACCAAGACCAACACCAGAAATGCGAAAAGCACAAGAAGAAGCAGCCGCAGTGAAAGACGCTATACGGCGAAACGAAGAAGCCAAACTAAAAGAAGAAGATGCCAAACTTTCTGAAGATGGGCGTCGAAAACGACGTGTCAAGATTCCTGTTCGTTTCCAGCAGGCTGTTCAAGGCAAAGAGCTGGAGCGTATATACGTCGAAAAGGGCGTCATCGATCGGTCAGAATCAATGATCGACGACGGTTTTACGCATTCGATAAAATTAGAACCCATTGACTGTGCGGACGAAATCATTGGCCATCTACAGGATACAGATGGCTCAAATTTGGCAGATCTCGTCTTTGAAAGCACAAaatctcaggtcggtcggaagtcgcaaaGCGTGAATTGCCGTCGCAAGACCAAATTCATGTGTGACGTTTGTAATCGTGGTTTCATACAAGAATTCCGGTATTTAGCGCATCGAAGCACCCACCATAACGTTCGGTACGAGTGCACACAATGCATAACGCAGTTCAAGCAAAGGTTTCATTTGTCCGAACACCAAAAGTTAACTGGCCATACGGGTGAAGGAATAATCGAGAATTTGGATGAATGTGATCGGTCAGAACCCAACGAGGACAACAATATGGATGAAACAACCAAGTTTGTTGGTGGTGGTGGTGGTGATGATGTTCTGGACGATATCAAAGCGGCTCGGATGCTATACGACCTGCAGAACACACAGATTAATAATGCAGATTACAACGCCTGTGATTATATGGGAAGTGACTTCGAACAACCTTCCCAACAACAGGCACAAAAAACAATACACATGGTGTGTGGCGATGTGTCAGGCGATGTGAATTCGGACAACGACGAAGTCGAACAACTAACGTCTGCCGTAGATATGCCAAACGAACGAAATGATTGCGCCTATTGCAATAAAACTTTTGCCAACGCCGAGCAGCTGAACATTCACGTTTCCCTTATACACAATATCGAACAAGACGACTATCAACAAATCGTTACTGTTGCTACGGAAGAGTTCAAGTATTCGTGCGACAAATGTGATCGAAAATTTCGCAATCGCAGCTCGGTAGTGTACCACAAAGACGCCGAACACAATTCGGGACGTCGCTTTGTTTGCAGCAAATGCAATAAAGTGTTCAAGCTGAAGCAGTTGTTGCAGCGTCATCAGCTCGTACACAGTGATGATCGACCGTTTCCATGCGACGTGTGCAATGCTTCGTTCAAGACGAAGCCAAATTTAATGAACCACCTGGCCAAGCATAGTGGCGTCAAGAAACACGAGTGCCGTGTCTGTGGCCAATCGTTTGCGCACAAAACCAGCCTGAAGCTACACTATCGATGGCATACCGGATCCAAACCGTTCGAGTGCAAGGAAtgcggcaagttgttcacacaaaacggtaatctacaagagcacatgcgtgttcacactggagaacgaccatacgagtgcaaccactgtgacaagaagttcaagaccagctctcagtgtagaatccacataaagcgccacattaactacaaaccgttcgagtgcaacatctgcagcaaaacatttctgcactttgaaatttaccggacacatttgcgtcgtcataacaacgagaagccgtttgcttgcgcACTTTGCCCGAAGACCTTTTCTGAACAGTGGGcactgcgaaaacatacacgcattcataccggtgagaaaccttaccactgcaatatctgcaataaagcattcaacgactgctccaatctgacgaagcacaAAAAGACTCATGAGAATACAAAAACTGAAGTGACAACCACGGAACAAGACGTCGAGGCCGTAGAAATTCTCGAAAATTTAGAAGCGGAAGCAGCAACAAATGCTGATGCATCGACCACAGAAACAGTGCCTGTATCGTCGAATCTTTCGGACGGAACTTTATGGAAGCTGCTGCACAACACCGAAATGGATAGCAGTTCTGTTGATCCCAACCAAATCATCTACGTGACCTATCAGGACCCTAATGATCCGGGCAGCAATAAAACCATGCAGGTGCTCAGTAATCTGAATGGATCTGACTTCTCGGATATTGGTAGCCTGAACGCTGCTAGCGGTGAAGTACTGCCTTCGCTAATAGACCAAAGACTTGCGGTGGCCAGCCCAAATGAAATCCAATCCGACGATGGAAGCGTATACGGTGACGAAATCAACGAATTCATTCAGCAGCACAAGGATGATCCATCGGCTATGGTAACTGGCGGGGGCTATGGTCTGGTTGATGATGACATGAGTGCCGTGGTTTCGGACTCACATCATCACAAGGAAAACATGAGGCTGCCCACTTCGACATTGCAATTTAGCGGTACTAACGAGTTGCCCATTCAATTGACCGATGATAAAGTTATGTTACGGCTAGACTGCGAACAAAACGGGCTGTTTGACGGAAACGGGCAGTCAATTGAGTTTGTGACGAGTGACGGGCGGAAATTGCAGCTTCTTGCGCACTACACGGAACCGCTGAACTTATCGTCCGAATTCAACGTGAACATGATGCAACCATGA
- Protein Sequence
- MAELEYDEQFCLYNSQVCRLCCVENANGSMLYMGEEEDISFLINSYLPIKISNDRRHPRWICPGCHLQVEATVEFFDLVINGQDKLRALLKLQKSTVDDLEAENTAQMEDATAAENVMTEGLFNGEHELRYRMDGIEKPKKKRGRPPRPTPEMRKAQEEAAAVKDAIRRNEEAKLKEEDAKLSEDGRRKRRVKIPVRFQQAVQGKELERIYVEKGVIDRSESMIDDGFTHSIKLEPIDCADEIIGHLQDTDGSNLADLVFESTKSQVGRKSQSVNCRRKTKFMCDVCNRGFIQEFRYLAHRSTHHNVRYECTQCITQFKQRFHLSEHQKLTGHTGEGIIENLDECDRSEPNEDNNMDETTKFVGGGGGDDVLDDIKAARMLYDLQNTQINNADYNACDYMGSDFEQPSQQQAQKTIHMVCGDVSGDVNSDNDEVEQLTSAVDMPNERNDCAYCNKTFANAEQLNIHVSLIHNIEQDDYQQIVTVATEEFKYSCDKCDRKFRNRSSVVYHKDAEHNSGRRFVCSKCNKVFKLKQLLQRHQLVHSDDRPFPCDVCNASFKTKPNLMNHLAKHSGVKKHECRVCGQSFAHKTSLKLHYRWHTGSKPFECKECGKLFTQNGNLQEHMRVHTGERPYECNHCDKKFKTSSQCRIHIKRHINYKPFECNICSKTFLHFEIYRTHLRRHNNEKPFACALCPKTFSEQWALRKHTRIHTGEKPYHCNICNKAFNDCSNLTKHKKTHENTKTEVTTTEQDVEAVEILENLEAEAATNADASTTETVPVSSNLSDGTLWKLLHNTEMDSSSVDPNQIIYVTYQDPNDPGSNKTMQVLSNLNGSDFSDIGSLNAASGEVLPSLIDQRLAVASPNEIQSDDGSVYGDEINEFIQQHKDDPSAMVTGGGYGLVDDDMSAVVSDSHHHKENMRLPTSTLQFSGTNELPIQLTDDKVMLRLDCEQNGLFDGNGQSIEFVTSDGRKLQLLAHYTEPLNLSSEFNVNMMQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -