Gbil021324.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010021645.1:686-3631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0016 0.092 13.4 0.6 2 23 160 181 159 181 0.97 2 13 0.0009 0.052 14.2 3.6 1 23 222 245 222 245 0.96 3 13 3.4 1.9e+02 3.0 0.1 1 12 251 261 251 273 0.67 4 13 0.0052 0.3 11.8 1.3 1 23 279 301 279 301 0.97 5 13 0.00051 0.029 15.0 4.0 2 20 308 326 307 327 0.94 6 13 0.00015 0.0087 16.7 0.7 1 23 456 478 456 478 0.95 7 13 8.4e-06 0.00048 20.6 0.2 1 23 483 505 483 505 0.98 8 13 1.1e-06 6.4e-05 23.4 0.7 1 23 511 533 511 533 0.99 9 13 2.8e-06 0.00016 22.1 2.2 1 23 539 561 539 561 0.98 10 13 0.00017 0.0095 16.5 0.0 1 23 567 589 567 589 0.93 11 13 6.1e-06 0.00035 21.1 0.7 1 23 637 659 637 659 0.98 12 13 2.2e-07 1.2e-05 25.6 2.3 1 23 665 687 665 687 0.98 13 13 2.1e-05 0.0012 19.4 0.8 1 23 693 715 693 715 0.98
Sequence Information
- Coding Sequence
- ATGGAATCACCTTCGCAAATGACTCAATATTATGAGTATAAGAACGAAAGCATCGGGAATACCTACAACCACTATGGCCAAGATTTCATGTTGACTAAACAAACAGTCGAAACGTCAAAATTCATTGACACCACAAATTCAAAGATGTGCAACATTTGCGAGCAAGCTGGTGGTCCAAGCAATAAGGAATGTCAACATATTACGCATCAACTGCTAAGCGAAAATTCTCATCCACAGACTGATGAACTTGCACCACTGCAGCATCTTCATCTACGATCACATATTCACCTACAGCAGCAGCACCAAATGCATGAAGAGTTAATGCTGGTGTCACAGTACTCTGGCGGAACAACATTGATTGTTGGAACGCCTCAGCAACTACAAATAACAACGCCTGATCAACCAACTCTTGAAATTGAACCACCGAAGCTGGTACTAAGCAAAAAACGAAGGACACCTAAAGATGACCAACAAGTCACGTGCACAATATGTTACACTGTGCTTAAGAACAAAAAGGGTCTTAAAATGCATCAGCAGATCCACGAAGAGATCACATTCAAGCAACACTTGGAAGCGCATTCTGGACACTGTTCGCTATGCGGTAAACACGTATCAGATGACATCCAAGGATATCGAAAACACATGAAAATACATCGTGAAAAGTTTAAATGTGACTTATGTAAGAAACGTTTTAATTCGTATGATGCTATTCGCAACCACATGAATGATTGTCACATGGAAGAAAAAATGTACAAATGCGATATGTGTGGCGTCATATTGCCCGAGGTTCTGCTTGAGGGTCACGCAAGAAAAGAGCATCGATTTTATCGTTTCCACGAGTGCCCATATTGTAATATGGAATTCGTTCATGTGACTGTTCTGCTGGACCACTTAAAATCCCACCGAGGCGACAAGCCGCTTCAGTGTTCGCAGTGTGGCCGCGTCTTCAAACGATACGGTCACTACAAAAACCATCAATGTTGTCGCCGAGCACTTCAAATTAAAAAGGAAAAAGAACTACAGGAAGCGGAAGCCCTGGACAAAGCCATTGAAGAAGCACAGTTTTCAGCGTCAATAAAAGATGAAGTCGATGTCGTACAGGAATCGATAGCTGAAGAAGCAAATGTCAAAGTGGATATTATTACACCAACCACCGTAGATTTGCATGAAATCAAAGAAGAAGCAAGCTTAGAACTAGCCGATTCtgatggagaccacgacacttatattcctaatggctgtgatgataacgacgacgaaggtgagaacagtggttacgatgaagacgacgacaaagaGCGAGTCCACAAAGAAGAAGTTTTCTGTGCTATGCTCGACAGCAAAACTTGCGGAGAAGAAAACGACTTTGTTTGCATCATATGTCAAAGAAAATTCAGTAaccgacgttcgcttcgcatccacatggaaatccacggcgaaaaacgataccaatgcgatgtatgcgcaatgagttttgtgcgttcgggacaacttaagtcacacatgaccgtgcacacgggcgagcgtccgtaccaatgcgaaatatgctcgaaacaattttcacaaacctccgtgctacgcgtccacatgcgagtgcataccggtgccaaaccttaccaatgtactatatgtgagaaacgcttcacccagtcagccaactatcatcgacatctggcagtacacactggcgaaaaaccattcccttgtatagtatgcggccgagcatttgctcgttcggctgctctcaagaaacacgctaagattcacagcagcgaaCCACGGTTGAATACTCGTAGCTCGCAACCACCTAAAAAAAAACGTGAGTCTCAGCTACTGAccgatctgataaaacgtggcgttcagatacccaacccttcagatccagttacctatctaggtgacaaaccgtttccatgcaaaatatgccgcaaaacattttcgcaatcgtccatcctatcagtgcacatgcgaatccacaccggtgagcggccctacaaatgcagtcagtgcgacaaaacattcacgcagtggaccaactataatcgacacttgtcggtgcacacgggcattcgaccgttttcttgcacagtatgtgaaaaaaaatttgcccgtttggcaacgcttaagattcacgagaaaacgcatGGAGAACCAATGTTGATGGTTTGTCTAAACGAGACCGATGGCACAAATGTGAAAACAATGCTTCATTCGAAGCAGATCAACGCCGAGAGTGTCCTGAGCACTTAA
- Protein Sequence
- MESPSQMTQYYEYKNESIGNTYNHYGQDFMLTKQTVETSKFIDTTNSKMCNICEQAGGPSNKECQHITHQLLSENSHPQTDELAPLQHLHLRSHIHLQQQHQMHEELMLVSQYSGGTTLIVGTPQQLQITTPDQPTLEIEPPKLVLSKKRRTPKDDQQVTCTICYTVLKNKKGLKMHQQIHEEITFKQHLEAHSGHCSLCGKHVSDDIQGYRKHMKIHREKFKCDLCKKRFNSYDAIRNHMNDCHMEEKMYKCDMCGVILPEVLLEGHARKEHRFYRFHECPYCNMEFVHVTVLLDHLKSHRGDKPLQCSQCGRVFKRYGHYKNHQCCRRALQIKKEKELQEAEALDKAIEEAQFSASIKDEVDVVQESIAEEANVKVDIITPTTVDLHEIKEEASLELADSDGDHDTYIPNGCDDNDDEGENSGYDEDDDKERVHKEEVFCAMLDSKTCGEENDFVCIICQRKFSNRRSLRIHMEIHGEKRYQCDVCAMSFVRSGQLKSHMTVHTGERPYQCEICSKQFSQTSVLRVHMRVHTGAKPYQCTICEKRFTQSANYHRHLAVHTGEKPFPCIVCGRAFARSAALKKHAKIHSSEPRLNTRSSQPPKKKRESQLLTDLIKRGVQIPNPSDPVTYLGDKPFPCKICRKTFSQSSILSVHMRIHTGERPYKCSQCDKTFTQWTNYNRHLSVHTGIRPFSCTVCEKKFARLATLKIHEKTHGEPMLMVCLNETDGTNVKTMLHSKQINAESVLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -