Gbil000280.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010011705.1:3990-6883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.037 2.1 9.2 0.1 1 23 260 285 260 285 0.96 2 14 0.0028 0.16 12.7 2.5 2 23 291 312 290 312 0.96 3 14 0.085 4.8 8.0 0.7 2 21 316 335 315 336 0.94 4 14 0.00016 0.0093 16.6 1.8 2 23 345 366 344 366 0.97 5 14 2.4e-05 0.0014 19.2 1.6 2 23 373 394 372 394 0.95 6 14 2.6e-05 0.0015 19.1 1.2 1 23 401 423 401 423 0.99 7 14 0.00019 0.011 16.3 1.0 1 23 429 451 429 451 0.95 8 14 0.00055 0.032 14.9 0.8 2 23 472 494 471 494 0.97 9 14 3.1e-05 0.0018 18.8 2.7 2 23 509 530 508 530 0.96 10 14 0.0037 0.21 12.3 0.2 1 23 533 555 533 555 0.98 11 14 0.00013 0.0075 16.9 0.3 1 23 562 585 562 585 0.96 12 14 0.00047 0.027 15.1 4.3 1 23 591 614 591 614 0.96 13 14 5.6e-06 0.00032 21.2 1.9 1 23 620 642 620 642 0.98 14 14 4.4e-05 0.0025 18.3 0.0 1 21 648 668 648 669 0.95
Sequence Information
- Coding Sequence
- ATGACGCACAAAGTGAACTGTCCACCGGCATACCATTACATTAAACATGAACAATTGGTGCTGCGGAAAAAGGATGTATTGTGTCGCTTCTGTTTGATGGCCAAGACCGACATGAAGCAAATTTCGTGCCTGCAACTGGAACGCTCCAAGATTCCACAATTCTACGAGGAGACTACATCACGTAAGCTCGAAATCTCTGAAGAATATTCGCAGCTCATGTGCCGAACATGCGAGCGCAGTATGACTATGGCGGCGAAGGCTCGTCGAGATTTCTTGTTGGTCGATGACTTCTGGAAGCGATATCTGTTCAAGCATGGCATTTCTGATGGAAGACACAAAAATCCAGACGATATCATCGTGATCGATAATCATGCCGAGTCAACAATTGTCGAAAGCAACCACGATGACGTGATTATCTTCAATGAAATTAAACCCGTAATGCCAACACCAATGCCAGATGTACTCTGTGATAATTCAAATATGGAATTGAATCCGTTGTCTGATCCACTGCCCATTGAAGTGGTTCACGTTAAAGTAGAGTCCCATTTAGACGATGAGGACGAGTTGAAGATTGAATATCCGCAAGCGTTCGGTTactatgataactttgcggacgatgatgacaacaacgaagacgatgatgatgatgttgatgaaagcaatgaacaaccggatgtcaacaagacgaaaaaaacaacaaaaaggataAAGGATAGAGTACCTGTAGGTGACATTAAGTACCCAGGTATACAGCCAATCGTTGGTGACAAGAAACGCTTCCGATGCACGCAAATTGGATGTACCGAAGAATACGATGAAATGTCTGAACTGAATAATCACATGGACATTGAACATGCCGTCAAGCAAATGTCTTGCAACGAGTGTGATCACATCTTCACTAGTCTAAGTGAAATTCGGCACCACGTCAAAGAACACATCGATAAGACGTGTCCTCGATGTCAGAAAACCTACGCCGCCTTTGATTTCTATAAGCGCCACATCAAACAATGCCGTGAAACGGATAGTTGCACGACCTGTGAACACTGCGGCAAGACCCTCAAGTCTGGAAAATCATTGGCCCGCCACTTGCTTACGCACTCGCATGGTGTTCACTTGATTTGTTacatttgcggcaaaggctataagaatcaaaaatacctgcgtcgtcacttacacattcacaccgagaaaaagaaaacgtttcagtgtacctactgtccgaaggcgttcgccaaaaagtccacacaaacagttcacgagcgcatgcacaccggagagcgaccgcacatgtgcgataaatgtggcGCTGCCTTTACACAAAATCGTTTGCTGGTCAGGCATAAGTTGCTTCATTTACGTGCACCGGGTAATAAGCTGCCCGGTCGTGGTCGTCGAGTTCAAAACGGTACCATCAAGTGTGAACTGTGCGAATCGATGTTCATCAATTTGAACAGTTTGCGGCGCCATCTACGCAAGTATCACAATAATCAACCATCGACGGTATATGACGAGAAACGAGCGACAACATGCAGCAAATGCAATATGTCATTTTCCGATCCAAAGCAATTGACACGCCACAAGTTTACTCATCTTGAGTTCGAATGTGATATATGCAAGCAACGCTACAGCACTGGTAAGGCGCTGGACGCACACAAAAATATTCATGGCAACAAAGTACATCCGTTCAAGTGCTCGGAATGTGGAGCCGCATACACACGTAAGGCCAGTATGCTGCAACATTATCGTGACGTTCATTTGAACCATCGACCGCACACGTGTATGCACTGCAATCGACAATATTCGAAGGAATACGATCTGAAGCGTCACATACAGGTGGTACACAACAAGAACCGACCGTACGAATGTCAAATGTGCGATCGTACCTTTTCGACGGCTTTTCAAATGCGTCAACACATGCAGTACCACACGGGTAACTTTCGGTATCGGTGTCCGGTGTGCGAGAAGGTATTTGTTAATGCTCAGGCACTGGCCAAGCATGCTCGTAACAGTAAAATGTGCCTACAAAAAGAGCCAGCGTTGGCCAAAATTGGCGGATGCAATCAGCACTTGGTACCACCACCACCGCCTGATCAGATCCTAAATGGACCTGTACCTGATTTAACGATTGGACTGGCTCCACCGCTACCAGTTAAAATAGAACAACAGATCGCTACACTTCCAGTGATTTTGCAGCAGCCGCAGAACAGCAACATAATATCGCCACCGGATATTGCTCATTCGATGTCAATCTCGTCGTTACGACCATTGATTGAACATCAATTGCTAAACATACCTCAACCGAGAATTTTCTCCGATCCAGTGAAGCCAACGGCTCTGATGATGAAGTTTCCTTATCTTTAA
- Protein Sequence
- MTHKVNCPPAYHYIKHEQLVLRKKDVLCRFCLMAKTDMKQISCLQLERSKIPQFYEETTSRKLEISEEYSQLMCRTCERSMTMAAKARRDFLLVDDFWKRYLFKHGISDGRHKNPDDIIVIDNHAESTIVESNHDDVIIFNEIKPVMPTPMPDVLCDNSNMELNPLSDPLPIEVVHVKVESHLDDEDELKIEYPQAFGYYDNFADDDDNNEDDDDDVDESNEQPDVNKTKKTTKRIKDRVPVGDIKYPGIQPIVGDKKRFRCTQIGCTEEYDEMSELNNHMDIEHAVKQMSCNECDHIFTSLSEIRHHVKEHIDKTCPRCQKTYAAFDFYKRHIKQCRETDSCTTCEHCGKTLKSGKSLARHLLTHSHGVHLICYICGKGYKNQKYLRRHLHIHTEKKKTFQCTYCPKAFAKKSTQTVHERMHTGERPHMCDKCGAAFTQNRLLVRHKLLHLRAPGNKLPGRGRRVQNGTIKCELCESMFINLNSLRRHLRKYHNNQPSTVYDEKRATTCSKCNMSFSDPKQLTRHKFTHLEFECDICKQRYSTGKALDAHKNIHGNKVHPFKCSECGAAYTRKASMLQHYRDVHLNHRPHTCMHCNRQYSKEYDLKRHIQVVHNKNRPYECQMCDRTFSTAFQMRQHMQYHTGNFRYRCPVCEKVFVNAQALAKHARNSKMCLQKEPALAKIGGCNQHLVPPPPPDQILNGPVPDLTIGLAPPLPVKIEQQIATLPVILQQPQNSNIISPPDIAHSMSISSLRPLIEHQLLNIPQPRIFSDPVKPTALMMKFPYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -