Gbil021618.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010007719.1:752-6749[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00092 0.052 14.2 0.1 1 23 10 32 10 32 0.95 2 23 2.4 1.4e+02 3.4 0.3 1 13 38 50 38 61 0.85 3 23 0.00058 0.033 14.8 0.3 1 23 148 170 148 170 0.97 4 23 4.9e-06 0.00028 21.4 3.9 1 23 176 198 176 198 0.98 5 23 6.9e-06 0.00039 20.9 0.1 3 23 206 226 205 226 0.95 6 23 1.1 63 4.5 5.0 1 23 232 254 232 254 0.98 7 23 0.6 34 5.3 0.8 1 21 260 280 260 281 0.94 8 23 0.00035 0.02 15.5 0.2 1 23 289 311 289 311 0.98 9 23 0.0007 0.04 14.6 3.7 1 23 317 339 317 339 0.98 10 23 0.049 2.8 8.8 0.6 1 23 345 367 345 367 0.93 11 23 0.16 9.2 7.1 1.3 1 23 373 395 373 395 0.95 12 23 0.0032 0.18 12.5 2.6 1 23 404 426 404 426 0.96 13 23 2.8e-05 0.0016 19.0 4.0 1 23 432 454 432 454 0.99 14 23 0.034 1.9 9.3 0.5 1 23 460 482 460 482 0.93 15 23 0.01 0.57 10.9 1.2 1 23 488 510 488 510 0.98 16 23 0.0052 0.3 11.8 0.3 1 23 519 541 519 541 0.97 17 23 0.00013 0.0076 16.8 6.7 1 23 547 569 547 569 0.98 18 23 0.025 1.4 9.7 0.5 1 23 575 597 575 597 0.94 19 23 0.00017 0.0099 16.5 0.4 1 23 606 628 606 628 0.98 20 23 2.8e-07 1.6e-05 25.2 2.8 1 23 633 655 633 655 0.98 21 23 0.013 0.74 10.6 0.2 1 23 661 683 661 683 0.97 22 23 8.1 4.6e+02 1.8 1.5 1 11 689 699 689 711 0.78 23 23 0.66 38 5.2 1.5 1 23 717 740 717 740 0.93
Sequence Information
- Coding Sequence
- ATGCGTAAACATTTGTACATTCGAAATTACATTTGTGAGTACTGTGCGCAGTCGTTTCCCTCGAAACAGGGCCTTAACAATCATGTGGGCGTCCACATGGACGAACGTTTACACAAGTGTGGCCTGTGTACCAAGGCATACAATTCGGCGGCCATTTCTTCGTTGCACCGGCGTAAGAAGCACATTGTCGACGGCTGCTACACGTGCGAACAGTGCTCGTTTTTCACACCCATTTTTGGACGCTTTAAAGCAATTCAAGTGCAACCAATGCGATGCCGCTTACGTGGACAGGTTGTCGTTTCAGCGGCACCTCAACGGGCACGCCAACCTGCGACCGTTCAGTTGTCAGCATTGCCAGCGATCATTCAATCGCAACCAAACTCTGACGAAGCACATTCAAACGCATCTTCAAATTCGACAGTTTCCTTGCCCTCACTGAAGTACAAGTGCGACCAATGTCCGGCACAGTATTCGTCCCGGGCGGCATTTCGACGGCATCTTGGATCGCATATTGACGTCTTTCCGTTTAGTTGTCACATCTGTGGACGCAAGTTTCGACTGAAATACTCACTGAGCGCTCACACACGGACGCATCAGCAAATTCGACGCAACGACTGTCCGTATTGTGACAAATCGTTTCGAACCGCTAAGGGTCTGCAAAATCATGTAGGCGTTCACACGAACGAACGCGGCCACAAATGCGGCCTATGCCCGATGGGCTTTAACTTTTCGTCCAGCTGTTCTTTGCATCGACGCAAACATATGGTCGACGGATTTTACAAGTGCCAAACGTGCGACTTCATAATCAATCATTTTGTTCAGTTCAAAGATCATTTGATGGCATGTTCGCCGCAATTGTTGAAGTACAAGTGCGAGAAATGTCCAGCACAATACGCGGACCGGGCGGCATTCCGACGGCACCTTGAATCGCACTCTGACTACTATCGCTTCAGTTGTCACATATGCGGCCGCGCGTTTAAACTGAAGTATGTCCTTGACAAGCATGTGCATACGCACTCGCGAGACCGACGACACACCTGCGAATATTGCGGAAAATTATTTCTGACCGACAAAGGTCTACAGAATCATGTTGGAATCCATACGAACGCACGCGTCTACAAGTGTGGCTTGTGTCCAAAGGACTTTAACTTCACGGCCAGCTCGTCATTGCATCGACGCAAGCATATGGTCGACGGTTTTTACAAGAAGTACCAGTGCGAAATATGCTCGGCCGAATACTCTTCCTGTTCATCATTCCGCCGGCACTCGGACTCGCACTCGGACTTCTATCGCTTCAAATGTCCCATATGCGATCGCAACTTTAAAAAGAAATACTGTCTGGACAAGCACGTGCTCACCCATTCGAAAGAACGGCGACACACCTGCGAATATTGCGGAAAACTGTTTCTTACCGTTAAGGGGCTACAAAACCACGTTGGCATTCATACAAATGCTCGTGCCTTCAAATGTGGACTGTGCCCGAGGGCGTTCAATTTCTCGGGCAGTTCGTCGAAGCATCGACGTTCGCACTTGGTGGACGGCTTTTACAAGAACTACAAGTGCGACAAGTGTCCGGCTCAGTATTCGGACGCTGCGGTCTTCCGACGGCATCGCGGCTCGCACACCGACCACAATCAGTTCAGTTGTCACATGTGCGGTCGCATGTTCAGGCTGAAATACTGTTTAAACAAGCACGTGCAAACGCATTTACAAATTCGTCGGCACAACTGTGACTATTGTACGCAATCGTTTTTGACCGCCGAGGGGCTACGAAATCATGTGGGCGTCCACACCGGTGAACGTGCATACAAGCCCTACAAGTGCAAATTGTGTTCGGCTCGCTTCAGTCAGCCGTCCGTTCTCGCCTATCACATGGACTCGCATAAGGGTCCATCGTTCAGTTGCCACATATGTGGTCGCGCATTCAATCAAAACTATTCGCTGAAAAAGCACGTTAACACGCATCTGCGTGTCCGCCGGTTTCCTTGTGACTACTGTTCGCAAACGTACCTAACCGCCGAGGGGTTGCGAAACCATATCGGCCGCCATACCGGCGAACGGTCGTACAAATGTGGCCTGTGTCCGATGGCGTTCAATTGTACAGCCAAATCGTCGATACACCGGCGCAAGCATTTGATCGACGGTAACTATCAGTGCGAAAAGTGTCCATTCCAAGTGAAGGGTTTCGCTTGGTTCAAGACGCATTTGTTGGCCTGCCATCCCGAGAGGCTGATGTTGTGA
- Protein Sequence
- MRKHLYIRNYICEYCAQSFPSKQGLNNHVGVHMDERLHKCGLCTKAYNSAAISSLHRRKKHIVDGCYTCEQCSFFTPIFGRFKAIQVQPMRCRLRGQVVVSAAPQRARQPATVQLSALPAIIQSQPNSDEAHSNASSNSTVSLPSLKYKCDQCPAQYSSRAAFRRHLGSHIDVFPFSCHICGRKFRLKYSLSAHTRTHQQIRRNDCPYCDKSFRTAKGLQNHVGVHTNERGHKCGLCPMGFNFSSSCSLHRRKHMVDGFYKCQTCDFIINHFVQFKDHLMACSPQLLKYKCEKCPAQYADRAAFRRHLESHSDYYRFSCHICGRAFKLKYVLDKHVHTHSRDRRHTCEYCGKLFLTDKGLQNHVGIHTNARVYKCGLCPKDFNFTASSSLHRRKHMVDGFYKKYQCEICSAEYSSCSSFRRHSDSHSDFYRFKCPICDRNFKKKYCLDKHVLTHSKERRHTCEYCGKLFLTVKGLQNHVGIHTNARAFKCGLCPRAFNFSGSSSKHRRSHLVDGFYKNYKCDKCPAQYSDAAVFRRHRGSHTDHNQFSCHMCGRMFRLKYCLNKHVQTHLQIRRHNCDYCTQSFLTAEGLRNHVGVHTGERAYKPYKCKLCSARFSQPSVLAYHMDSHKGPSFSCHICGRAFNQNYSLKKHVNTHLRVRRFPCDYCSQTYLTAEGLRNHIGRHTGERSYKCGLCPMAFNCTAKSSIHRRKHLIDGNYQCEKCPFQVKGFAWFKTHLLACHPERLML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -