Gbil013679.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- PRDM15
- Assembly
- GCA_026546565.1
- Location
- JANSWN010021013.1:9757-13323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00022 0.012 16.2 4.6 1 23 229 251 229 251 0.98 2 15 9.7e-05 0.0055 17.3 5.8 2 21 258 277 257 279 0.95 3 15 0.0011 0.064 13.9 1.0 1 23 284 306 284 306 0.97 4 15 0.0011 0.063 13.9 1.5 2 23 365 386 364 386 0.97 5 15 6.2e-05 0.0035 17.9 6.3 2 21 393 412 392 414 0.95 6 15 0.0017 0.099 13.3 1.3 1 23 419 441 419 441 0.97 7 15 0.0069 0.39 11.5 1.5 3 23 489 509 487 509 0.97 8 15 0.0046 0.26 12.0 0.1 1 22 594 615 594 618 0.91 9 15 2.1e-06 0.00012 22.5 1.4 1 23 695 717 695 717 0.98 10 15 4.2e-07 2.4e-05 24.7 1.2 1 23 724 746 724 746 0.97 11 15 1.6e-05 0.00089 19.8 1.3 3 23 758 778 757 778 0.98 12 15 2.7e-05 0.0015 19.0 2.8 1 23 784 806 784 806 0.99 13 15 1.4e-06 7.9e-05 23.1 2.2 3 23 814 834 812 834 0.97 14 15 1.7e-07 9.8e-06 25.9 1.6 1 23 840 862 840 862 0.99 15 15 0.028 1.6 9.5 0.0 1 23 868 892 868 892 0.93
Sequence Information
- Coding Sequence
- ATGGACACAGAAATCGAATACGATATGAACAAAATATGTCGTTCTTGTCTCAACAACAGCGGCGATTTGATATCGGTGTTCGATGGCAATGAAAAACAGCCCGAAATGACTGCGCTCAGCGAAATTATAATGACGTTCACGCAGGTCCAGATAACCAGAAGTGATGGCCTACCGCACAAGATTTGTGGAAAATGTGCGGCCGAGGTGCGCAGTGTACTCTCATACAAACAGAAAATTGAAGCAAGCGATCTGAAGCTACGCAACTTTGTCGAACGAAAATTTGGAAAATTCTGCATAAAAGACGAAATTGAAGTTGGCAATTGTAAAGTGGAACCTGATGTGCAGCTATTCGATGAACCACAACAACACCATGGTGGCCAAAAGAAGCGGCAACTACAACAAAATCAACAGTCATCGTTTCATAATTTGCGACAGCTCACATTGGCCAGCGTCGATGTTGATATGGACGATGTGGCCGATGCTGATAAATTTGCTGTGGACGATGATTACACACCGAACGGTGATGATAGTAGCGTCGTTAGTAGCCTAGACAATAACGATGATATGCGTGACTTGGACTTCATACTAGAAGAAAAAGAAGACGACATTGACGAATTGGAAGTTGAAGCAGACGACGACAATGAAGAGAAACAACGGGTCAAACCTAAAATCATAAATGGTCGATTCCAATGCCATTTATGTGAAAAAACATTGGCCGATCGTAAAACACTAAAGCATCACATTCGATTGCACACTGGTGAAAATCTAAAAAAATGTTCGATCTGTGGTCGTGGTTTCACAAAAAAAAATCATTTGGAACGCCATATGCGGTGTCATTTGAAAAAAGAATACCCATGCAAGTACTGTGACGAAAAATTCGAAACGGCTAAAGATCGACGTCAACATTCGATCACCCACGATGAGTACAAGAATTCAGATAAAAAGTTGCCGGCAAAACGAAGTAAAAGGAATAAAAAAGAAAAAGTTGGGAAAAACGATGAAACGGGCGATATGGATTTTGATATTGATGATTACCAATCTGGTTCGGACGAAGGCTACGCTGATGTACCAGAACCTATTGACGGACGTATACAATGTAAATTGTGCAATAAATCACTGGGCGATCGACGTACATTTAAACTACATATGCGTTTGCATACGGGCAAAAATCTTAAGAGATGTCCTGAATGTAATCGAGGTTTTTCCAAAAAAAGCCATTTGCAACGACACATGAAGTGTCACATGATGAAAGTGTACGCTTGTGACTATTGTGATGAAACATTCGATACTGTACACAATAGACGTCTCCATTTACTCAGTCATGACGTTGGCGGAAAAACTGGCAGCAAAGGCCCATCTCAAGAGTTGCTGGACTTTAAGCTGAAACGTGAAATGACAAAATTGGCGGACACATATGATGCATTCTACTGCATGGGCTCAGCAAATGCCATTAAGCAATGTTTGTGTAAACTTTGCGATCAACAGTTCGATACCATTGCGAAATTACGTAATCATTTGATGGTTCACATGAACGATGCAGTTCCAGTGCTTGCCTCATTGAATCTTAAAGAACGTTCCGAATTGTTTGACATGACACGCATCAATATTTTTACTGAAACCAATGAAGGTTTGGCCCAACACATTCAACAGAAATTGCGTTGTATGGAATCGACACGTTTCTATCGTATTCTCAATCAACAACAATGGGAATTGAGTTTGTCCGATTCGGAAACAGAAGACGAAATCGATAAAGTGGTAAAAATTGAACCAACCAGCCAGTATATGTGTGCCGTGTGCGGTATGTCATTCGATCGAGTTTACAAAATTATTGCTCATATGAAAAACGATGCACATCAGCTAGCCGATTTTGTGGCTTTCAAGTGTTCGCACTGTTGCAAAATATTTCCATGCCAAGCGGTGCTGGATAAACATTTGCGAGCACAATGCGAGAACATTATGAAATTGATACATTGTAAAGTTTGTCGAATGCGATTTACTTGGCAAGATAGCTGCGATGCGCATATGGCAAAAATGCATTCACGTTCATCGGCCAAGCTGTACAGACAGGCTTTGATCAAAGCGTACACCTGTGAAATATGTGCGAGATCATTTGCACGCAAGGAACACCTCGAGCGACACCGAAACATCCATATACCTGATGGGCAGAAGTTTTCATGCGATATATGCAAAAAGAAGTTCAACCGTAAGGATAATTTAATGGTTCATATGCAAGCGCACATCGAGGGGAGAGAAGTCGATACCGACAAGCTATGCGTATACTGTGGAGTAagatgttcaaactcatcaaatcttattgtacatatgcgacgtcataccggcgagaaaccatacaaatgtgatctgtgtgataaaggttttccacgatcatcagatttacagtgtcatcgacgaacgcatacaggcgaaaaaccatgtctatgtaccatttgtggcaaaggattctctcgatcgaataagctggtccggcatatgcgtatccatacaggcgtacgaccatataaatgtacatattgtgatcgtgcttttacccaatccaacgatttgacgttacacattcgtcggcacactggtgacaaaccatatgtttgtggtatttgtggcgatcgttttatacAGGGAACAGCGCTTGCAACGCATCGTCGAATGCAAGGTCACTATGAGGATGCACAACCGACACCATTCTCTAGTATCAGTGTTAATAATCCAAATCGATTTACGAACGTCAATCGTGTGAATCGCATCGGAACAACGGATAATCCCGTAAAAACTGAAGACAAACGAAACGAACGTATTGCTGAATCAATTATTATTACGCCATTGCTCAGTACAACAGCACCATCGCCTGTTGGTGGTGTTACACCTATCATAATAGGTGATGATTCCATGACATCGTCACAACATTCGCAGCAACACTCACCGCAGCAACCGAATAATGCATCATTAAATGCACCACGAATCATTCCATTCAGCGGACCACCGTACCATGGTAATCCGTTTGCATTGTCTGGACTAGAATTTCCAATGCCACCACACTTTCATTCCGGTCAATATCATCACTGA
- Protein Sequence
- MDTEIEYDMNKICRSCLNNSGDLISVFDGNEKQPEMTALSEIIMTFTQVQITRSDGLPHKICGKCAAEVRSVLSYKQKIEASDLKLRNFVERKFGKFCIKDEIEVGNCKVEPDVQLFDEPQQHHGGQKKRQLQQNQQSSFHNLRQLTLASVDVDMDDVADADKFAVDDDYTPNGDDSSVVSSLDNNDDMRDLDFILEEKEDDIDELEVEADDDNEEKQRVKPKIINGRFQCHLCEKTLADRKTLKHHIRLHTGENLKKCSICGRGFTKKNHLERHMRCHLKKEYPCKYCDEKFETAKDRRQHSITHDEYKNSDKKLPAKRSKRNKKEKVGKNDETGDMDFDIDDYQSGSDEGYADVPEPIDGRIQCKLCNKSLGDRRTFKLHMRLHTGKNLKRCPECNRGFSKKSHLQRHMKCHMMKVYACDYCDETFDTVHNRRLHLLSHDVGGKTGSKGPSQELLDFKLKREMTKLADTYDAFYCMGSANAIKQCLCKLCDQQFDTIAKLRNHLMVHMNDAVPVLASLNLKERSELFDMTRINIFTETNEGLAQHIQQKLRCMESTRFYRILNQQQWELSLSDSETEDEIDKVVKIEPTSQYMCAVCGMSFDRVYKIIAHMKNDAHQLADFVAFKCSHCCKIFPCQAVLDKHLRAQCENIMKLIHCKVCRMRFTWQDSCDAHMAKMHSRSSAKLYRQALIKAYTCEICARSFARKEHLERHRNIHIPDGQKFSCDICKKKFNRKDNLMVHMQAHIEGREVDTDKLCVYCGVRCSNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYKCTYCDRAFTQSNDLTLHIRRHTGDKPYVCGICGDRFIQGTALATHRRMQGHYEDAQPTPFSSISVNNPNRFTNVNRVNRIGTTDNPVKTEDKRNERIAESIIITPLLSTTAPSPVGGVTPIIIGDDSMTSSQHSQQHSPQQPNNASLNAPRIIPFSGPPYHGNPFALSGLEFPMPPHFHSGQYHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -