Basic Information

Insect: Gnoriste bilineata
Gene Symbol: -
Assembly: GCA_026546565.1
Location: JANSWN010041455.1:475-2718[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.1e-05 0.00063 20.3 3.5 1 23 248 270 248 270 0.97

2 12 5.8e-06 0.00033 21.1 1.3 1 23 276 298 276 298 0.98

3 12 4.2e-06 0.00024 21.6 1.4 1 23 304 326 304 326 0.99

4 12 5.6e-07 3.2e-05 24.3 0.3 1 23 332 355 332 355 0.96

5 12 9.4e-05 0.0053 17.3 4.4 1 23 362 384 362 384 0.99

6 12 8.4e-07 4.8e-05 23.8 0.4 1 23 395 417 395 417 0.98

7 12 0.00073 0.042 14.5 3.4 1 21 423 443 423 445 0.96

8 12 4.3e-05 0.0024 18.4 0.1 1 23 453 475 453 475 0.98

9 12 8.8e-07 5e-05 23.7 1.2 1 23 483 505 483 505 0.99

10 12 0.0001 0.0058 17.2 1.2 1 23 528 551 528 551 0.95

11 12 0.00037 0.021 15.4 0.0 2 23 560 582 560 582 0.96

12 12 0.0069 0.39 11.4 1.2 2 23 588 609 588 609 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.1e-05	0.00063	20.3	3.5	1	23	248	270	248	270	0.97
2	12	5.8e-06	0.00033	21.1	1.3	1	23	276	298	276	298	0.98
3	12	4.2e-06	0.00024	21.6	1.4	1	23	304	326	304	326	0.99
4	12	5.6e-07	3.2e-05	24.3	0.3	1	23	332	355	332	355	0.96
5	12	9.4e-05	0.0053	17.3	4.4	1	23	362	384	362	384	0.99
6	12	8.4e-07	4.8e-05	23.8	0.4	1	23	395	417	395	417	0.98
7	12	0.00073	0.042	14.5	3.4	1	21	423	443	423	445	0.96
8	12	4.3e-05	0.0024	18.4	0.1	1	23	453	475	453	475	0.98
9	12	8.8e-07	5e-05	23.7	1.2	1	23	483	505	483	505	0.99
10	12	0.0001	0.0058	17.2	1.2	1	23	528	551	528	551	0.95
11	12	0.00037	0.021	15.4	0.0	2	23	560	582	560	582	0.96
12	12	0.0069	0.39	11.4	1.2	2	23	588	609	588	609	0.94

Sequence Information

Coding Sequence: ATGAATATTAAAATTGATATAAATGTTTGTCGAGTATGTCTGCAAACTGGCTCTGGAATATCACTTTACGGAGAGCTAGGCTACGCTAAGAAATTTCAGTTTATAACTCAATTGCAGCTGGAACAGAGCGATGGTTTGCCCGAAACAATTTGCCTAAAGTGTGTTGCACGGCTTAAAGTTGCCTACGAATTTAAACGTCAAAGTGAATCGTCCGATCAGCATTTGCGTAGTTTTATCATTGAAGTGAACAGTAGATTCAATAAAGTTACGGCTATAGATGGCATAAACGAAGAAGACGAATTACAAATGTTGCTAGAAGGTGACTACCAACCGGAACCACAAGAAAAAAAACCTGTTCCTAATCTAATTGTTAAGGCTGCTGCAACAAAACAACAAAAAAAACCGAAAGTAGATCCGATAATTGCACAAATACCAATTAAATTTCATATCAAACCTGATGTACAGTCTGAAGAGGAGCCAGACGAAGAAACAATAGCAGAGACAATTGTTGACGATGACGGCCGAATGTATGAGGAAGTTTTATACGATGAAAACACTGCAGAAGGAGACATGGAAGCTGATGAAATGGGAGAATCTATCGAAGACGAATTGGATACACAACAAAGTTTAAATGACAATGAAGAGTACATTGAAGAGGAACATTTGACCGAACAATTTGTCGAACCTAAAGTAGGGCCACCACGTAAGGTGCGACGAAATAAAATTGAACGTGGCACTGCccacatttgtgtgaaatgctacaaagattttagcacaaaaactaatttaatgcgtcacatgctaacgcacgatggaaagaagccatttcagtgtactgtatgcggaagtggtttcactcaaagcggatcgcttaagcaacatatgcacattcataccggtgaacgaccctatgtatgtccaatatgtaatcgtggattcacccaaagcaaatcactaaaattccatatgcgtcgtcataccggtgaaaagccatatccatgtgatgaatgtggtatttcatttcgtcagcgtgatggacttaagCGTCATCAATCAGTTAGACATAATGGCGATGCGGCAACATTTCAGTGCTTGGAATGCAAAAAACACTTGACATCTAAATATTCGCTTAGCATACATATGCGAAAACATGTTTTGATGCGTGAGTCCAATGCGAACGAATACATTTGCGATGAATGTGATAAAAAGTTTGCTAGCAAAGCATCATTGGTGAACCACCAGCGTCAGCATACTATTGAAAAATCATTTAAATGCCAGCAATGTCCGTTAGTATTTCAGCAGAAAGTATCATTGCAGAATCATATGAAGTGTCATTTGACCGATTTCGTTGATCAATACGAATGTGGTTTGTGTGAAAAAAGTTTTGCCGAAGAGGATCAACTGCAAACGCATTTAAATTGGCACAACAATATGCCAACCAAACCATACAAATGTGGCGAATGCAACAAAAGTTTTTCTATCAAGCGAAACCTGATTAATCACGTCAAAACCCATAATATGGATATTGTGGGCCAAGATGAAGATCAAAATAAGCCCGCTCAAACTGATCTGCTGACCGTTTACAAATGTGATGACTGCAATATAGGCTTCAATTCGAAGCGTACACTTAAATTACACCGTAGCAATGATCACAAAGAAATTGTACCCGATCTAAATGAATGTGAAATCTGTAATATTTCGTTTATACAGGTTACCGATCTTAATGATCATATAGCGACTGAGCATGATGCCATTGATGAAAAGTGCGACAAATGCGATGAAGAATTTGTATCACAGAAATTGTTTGAGGAGCATAAGTTTCAACATGAAATTAATGATATAGAGTAG
Protein Sequence: MNIKIDINVCRVCLQTGSGISLYGELGYAKKFQFITQLQLEQSDGLPETICLKCVARLKVAYEFKRQSESSDQHLRSFIIEVNSRFNKVTAIDGINEEDELQMLLEGDYQPEPQEKKPVPNLIVKAAATKQQKKPKVDPIIAQIPIKFHIKPDVQSEEEPDEETIAETIVDDDGRMYEEVLYDENTAEGDMEADEMGESIEDELDTQQSLNDNEEYIEEEHLTEQFVEPKVGPPRKVRRNKIERGTAHICVKCYKDFSTKTNLMRHMLTHDGKKPFQCTVCGSGFTQSGSLKQHMHIHTGERPYVCPICNRGFTQSKSLKFHMRRHTGEKPYPCDECGISFRQRDGLKRHQSVRHNGDAATFQCLECKKHLTSKYSLSIHMRKHVLMRESNANEYICDECDKKFASKASLVNHQRQHTIEKSFKCQQCPLVFQQKVSLQNHMKCHLTDFVDQYECGLCEKSFAEEDQLQTHLNWHNNMPTKPYKCGECNKSFSIKRNLINHVKTHNMDIVGQDEDQNKPAQTDLLTVYKCDDCNIGFNSKRTLKLHRSNDHKEIVPDLNECEICNISFIQVTDLNDHIATEHDAIDEKCDKCDEEFVSQKLFEEHKFQHEINDIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -