Gbil009929.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- su(Hw)
- Assembly
- GCA_026546565.1
- Location
- JANSWN010061689.1:1690-4438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00044 0.025 15.2 1.1 1 21 64 84 64 85 0.94 2 13 3.4e-05 0.0019 18.7 2.1 2 23 143 165 142 165 0.94 3 13 1.5 84 4.1 0.5 1 23 171 193 171 193 0.95 4 13 2e-05 0.0011 19.5 2.4 1 21 199 219 199 220 0.95 5 13 2.7e-06 0.00016 22.2 0.2 2 23 233 254 232 254 0.96 6 13 1.6e-06 9e-05 22.9 1.4 1 23 264 286 264 286 0.99 7 13 3.1e-07 1.7e-05 25.1 0.3 1 23 292 314 292 314 0.98 8 13 1e-05 0.00058 20.4 0.8 1 23 320 342 320 342 0.97 9 13 4.5e-06 0.00026 21.5 0.7 1 23 348 370 348 370 0.95 10 13 2e-06 0.00011 22.6 0.9 1 23 376 399 376 400 0.96 11 13 2.3e-05 0.0013 19.3 0.8 1 23 437 459 437 459 0.97 12 13 2.6e-05 0.0015 19.1 3.2 1 23 465 487 465 487 0.99 13 13 0.018 1 10.2 4.3 2 23 494 516 493 516 0.94
Sequence Information
- Coding Sequence
- ATGACTTCGGTAATCAATGTGAAAATCAACGAAAACGATGAAATCGAGTATGTCGATCTTGAGGAGTCGCAAGAGGAGAACTTTGAAGAATACGAGGTGTTCGATGATGACAACAACATTTTAGTACCGAAAAGCGACGGTGTGATGACCATCAAACCAAAGGATCAAATGCAAAATACCTTCATCGAACATGTATGCGGAAAATGCAAAAAATCGTACAAGTCTATCGGGTATCTCAAGCGTCATTTGAATCTGTGCCGAAACCTACCGATCGTCAAGAGTAATAAATGTGATACCAATGCCAATAAACCGCAACCGGCTGACGAAGAAATGGAATTGGTTTCATTTTCCAGTATACCAGAACTTAACGACGATACGTGCTACTGCTGTTTTGAGAAGAAGGAAACTGCCCATAGCGGTCATATCCGTTGCAACTTCTGTCCGAAGTCATTCAAGTCGCACATTAACCTGGAGCGTCATCTTTTCTCCGTACATTCGGCTAGTACAAGATATGCGTGCAAAAGCTGTAATGCTACTTGTCCGAATCAAATGATCTTGGACCTACATATGGAGTCACACGGTGACGGTAAACCATTCTCATGTACCAACTGTGGTAAAGATTTCACGCGTCGGTACCATCTCGATCGTCATCTAAATTACACTGGCTGTGATAAGGCACGCCCGAAGGCTGCTTTACCGTGCCAAGTGTGCAATAAAGTGTTCTCGCGCATCGATAATCTGCGGGAACATTTGCGTGGTCACATGGGACAGCCGGGACGACGCAAGGACTACGAGTGCCCGTATTGTGAACGCTGTTTCTATGGATCGTCATTGTTGAGcattcacatccgtacacacactggcgaaaaaccttttccatgcgacctatgcgacaagtcgtttccttctaacggagctcttcgcaagcatcgtcgtatgcacactggcgagaaaccatatgcttgcaaacagtgtgaaaaaacgttctcggccaaggaaacgctgaaccgtcacgtaaagatacacactggtgttaggcctcatgcatgtagtatctgtcctaaaagtttcatacaaGCAACACAGCTGCGCGCCCATATGTTCAACCATACCGGAGAGAATGGGTTCGCATGCGAAATATGCGATCGTTCCTTTAGTCGCAAGGCACGGCTGGACGCTCACATGAAAACGGGCCATCATGGAAATGTAAAATCACGGAATGCCACCGCTACGTCTCGTGATAAAACACAGCACTTATCGGCGGTTGCTACAAGCATTTCAACGGCAGAAAATGCCATCAGCCTGGAATATACGTGCGACATTTGCTACAAGAATTTCAAGAAAATGGAAAATCTGGTGCGCCATATGGACGCACACCGAGGCATCAAAAATTTTACTTGCAACGAGTGTGATAAACGTTTCAGCACAAAGGCATCGTGCGCGGTTCACATGAAAACCCACATTAACGCTGAACCTTGCGCGTGTAAGGTGTGCAAGCTATCCTGCAAGAGTTTAGATGTTCTGATGCGGCATATGCGCGACAAACATCGTGAAATTCTTTATAGTATCATCAGCGATGATAAGCCTGCAACGAGAACTTCGTCGAAAAAAACTACGCCGGCTGCTACTAATGACGCTAAAGACACTGTTGATGCTGCAACTGCAATGTTGACCACGACCAACGACGACGAACAAGTGTTTGAAATTATTGAATTAAAAAGGGAACGTTTCGCAGACGATTATACGGCCGGTATAATTAAAACCGATATCGATATGGTTGATGAATTAAAGAAGCCGTTGAGTGATAACGACTTAACTGAGAATGTCGGGCGCCTTTTGAATTTGCTGGTCGACGAACAGACGCTTTACGGACTCGGTTGGCCATCAGCCGGATGCGAGGAAGTTTTAAACGCTGTCATTCAACAGTGTGGTCAAACGCCAGCCGACTATTGTAGTTGTCCCGACTATGCAACGAAAATGCGCGAAAACTCAAAGTTGCTCTTCACAGCTGTCATCGATAATGATTCCATCAAACAGCTACTGAACAATCATTCCGTGGATGAGGTGATTGTGCATGTGCTAAAGTTGGCGGCATAA
- Protein Sequence
- MTSVINVKINENDEIEYVDLEESQEENFEEYEVFDDDNNILVPKSDGVMTIKPKDQMQNTFIEHVCGKCKKSYKSIGYLKRHLNLCRNLPIVKSNKCDTNANKPQPADEEMELVSFSSIPELNDDTCYCCFEKKETAHSGHIRCNFCPKSFKSHINLERHLFSVHSASTRYACKSCNATCPNQMILDLHMESHGDGKPFSCTNCGKDFTRRYHLDRHLNYTGCDKARPKAALPCQVCNKVFSRIDNLREHLRGHMGQPGRRKDYECPYCERCFYGSSLLSIHIRTHTGEKPFPCDLCDKSFPSNGALRKHRRMHTGEKPYACKQCEKTFSAKETLNRHVKIHTGVRPHACSICPKSFIQATQLRAHMFNHTGENGFACEICDRSFSRKARLDAHMKTGHHGNVKSRNATATSRDKTQHLSAVATSISTAENAISLEYTCDICYKNFKKMENLVRHMDAHRGIKNFTCNECDKRFSTKASCAVHMKTHINAEPCACKVCKLSCKSLDVLMRHMRDKHREILYSIISDDKPATRTSSKKTTPAATNDAKDTVDAATAMLTTTNDDEQVFEIIELKRERFADDYTAGIIKTDIDMVDELKKPLSDNDLTENVGRLLNLLVDEQTLYGLGWPSAGCEEVLNAVIQQCGQTPADYCSCPDYATKMRENSKLLFTAVIDNDSIKQLLNNHSVDEVIVHVLKLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -