Basic Information

Insect: Gnoriste bilineata
Gene Symbol: -
Assembly: GCA_026546565.1
Location: JANSWN010071378.1:1997-6938[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.7e-06 0.00044 20.7 1.2 1 23 371 393 371 393 0.96

2 18 0.00041 0.023 15.3 0.1 1 23 399 421 399 421 0.97

3 18 5.5e-05 0.0031 18.1 1.5 1 23 427 449 427 449 0.98

4 18 0.00016 0.009 16.6 2.5 1 23 455 477 455 477 0.97

5 18 2.9e-05 0.0016 18.9 5.6 1 23 483 505 483 505 0.99

6 18 0.0001 0.0058 17.2 5.7 1 23 511 533 511 533 0.97

7 18 6.8e-07 3.9e-05 24.1 5.0 1 23 539 561 539 561 0.98

8 18 2e-07 1.1e-05 25.7 2.5 1 23 567 589 567 589 0.97

9 18 0.0001 0.0059 17.2 6.7 1 23 595 617 595 617 0.97

10 18 0.00015 0.0087 16.7 5.4 1 23 623 645 623 645 0.98

11 18 1.8e-06 0.0001 22.8 2.6 1 23 651 673 651 673 0.98

12 18 0.00064 0.037 14.7 8.5 1 23 679 701 679 701 0.96

13 18 1.3e-06 7.4e-05 23.2 4.7 1 23 707 729 707 729 0.98

14 18 0.00031 0.018 15.7 9.0 1 23 735 757 735 757 0.98

15 18 2.3e-05 0.0013 19.2 6.2 1 23 763 786 763 786 0.96

16 18 9.4e-05 0.0053 17.3 0.3 1 23 792 814 792 814 0.97

17 18 2.2e-05 0.0012 19.3 0.9 1 23 824 846 824 846 0.98

18 18 7.8e-05 0.0045 17.6 0.2 1 23 852 875 852 875 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.7e-06	0.00044	20.7	1.2	1	23	371	393	371	393	0.96
2	18	0.00041	0.023	15.3	0.1	1	23	399	421	399	421	0.97
3	18	5.5e-05	0.0031	18.1	1.5	1	23	427	449	427	449	0.98
4	18	0.00016	0.009	16.6	2.5	1	23	455	477	455	477	0.97
5	18	2.9e-05	0.0016	18.9	5.6	1	23	483	505	483	505	0.99
6	18	0.0001	0.0058	17.2	5.7	1	23	511	533	511	533	0.97
7	18	6.8e-07	3.9e-05	24.1	5.0	1	23	539	561	539	561	0.98
8	18	2e-07	1.1e-05	25.7	2.5	1	23	567	589	567	589	0.97
9	18	0.0001	0.0059	17.2	6.7	1	23	595	617	595	617	0.97
10	18	0.00015	0.0087	16.7	5.4	1	23	623	645	623	645	0.98
11	18	1.8e-06	0.0001	22.8	2.6	1	23	651	673	651	673	0.98
12	18	0.00064	0.037	14.7	8.5	1	23	679	701	679	701	0.96
13	18	1.3e-06	7.4e-05	23.2	4.7	1	23	707	729	707	729	0.98
14	18	0.00031	0.018	15.7	9.0	1	23	735	757	735	757	0.98
15	18	2.3e-05	0.0013	19.2	6.2	1	23	763	786	763	786	0.96
16	18	9.4e-05	0.0053	17.3	0.3	1	23	792	814	792	814	0.97
17	18	2.2e-05	0.0012	19.3	0.9	1	23	824	846	824	846	0.98
18	18	7.8e-05	0.0045	17.6	0.2	1	23	852	875	852	875	0.96

Sequence Information

Coding Sequence: ATGCAAACATCTGAAGATAGCAACGTACAGCAAATCATTACCGGGCAATCTCTACTCCCAGCAGATTCACCGCAAAATGCATTAACTCGATCTGGTGGAAGTACTTCGTCTGCAGGCCGACCAATCATAGTATCATCATCAGGAAACCGATCATCAATTGCGCTCGCCGCCTCATCGTCTTCTACTACACACTCGACATTAAGCGTGCGACATCCTCATTCTAGTCAAGGTCAACATCTACAGCAGCACCTACAACAACCACATCCGCATTTGCAACAATCACAAAATCCGCAACAAAATGTAACCAATCATCGTAAAACAGCAACTCTTCAAAGTAATGTGCTGAATCAAATGAATTCGCAATCCGTCCATCACCTAGGCACCGATCATATGCAACAGGTTCATCAGGTTCTTGACCATGCATTAAGTGGAAAAATGCAAATAATCAAAGAAGAAGCATTGGCGAACAGTACAAAGTTACATTTGCAACATCCGCAGCAATTGCCACCACCACCACCTATTCCACATTCTCACCATCATCTGTTGCCACCGCCACCACATCTCCAGCATTTGTCACACCATCAACAAACACCGTTGCTAGACGTTCGTGGTGCTGACGGTCAAATTCTACATGTCAACATCGAGGATATCAGCCAGTTTTTGACATATCACGAGGTATTTGGAAAAATGCCAACTGATAGTGCATTAGCATTAGGTGGTGCCGTAACGAATCCATTGGTGCCAACGGTTTCGTTGGCTAATTCGTTGGCCTCTGCTTCTTCTTCGTCCATAACGAATGCCATAAACaatgtcattggtcagtcacagaatgcagttttgttatcgcaacaacaacaacagcagcagcagcaacaacaacaacagcagcagcaacaaccacaaccacaacaacagcaacaacaacagcagcagcagcagcagcaacaacttcagtcgccgccatcttcatcgtcttcgtcgtctgtttcgtcaatagtaactcccaaacgggaaaccaccccttctaatataatccaacagctagaatcaccgtcaggcagtaccacCAATCCGACCGATATAAACGGTTTGCCGCTTGTCACCGCAACCCATGCATGCGATATTTGCGGAAAAATGTTCGCGTTCAAGTATCAGCTGATTGTGCATCGACGGTACCACAACGAACGGAAGCCATTCATTTGCCAGGTGTGCGGCCAGGCGTTCACCACGACCATCGAGCTATCGGCTCACGGAAAATCTCATGACGGTAATAATATGTTTACATGTAATGTTTGCTATCATGTGTTTGCCAACGATGCCAGCTTAGAACGCCATATGAAACGACACTCGACGGACAAGCCGTTTGCATGCAGCATTTGCCTAAAGACGTTCGCTCGCAAGGAGCACTTGGACAATCACTTCCGCAGTCATACAGGCGAAACTCCATTCAGATGCCAGTAttgtgcaaaaacgtttacacgcaaggaacatatgcaaaatcatgttcgcaagcacaccggcgaaactccgcatcgttgtgatatttgcaaaaaatcatttacccgaaaggagcattacgtcaaccattatatgtggcataccggtgaaactccgcaccagtgcacagtatgtggcaagaagtatacacgcaaagaacacttggccaatcatatgcgttcacacacaaacgatacaccgttccgttgcgaaatctgtggcaaatcgtttacacgcaaagagcactttacgaatcacattctatggcataccggtgaaacaccacatcgctgtgatttttgttccaaaacatttacacgcaaagagcacctgttgaatcacgttcgccagcataccggtgagtcaccacatcgttgtggctactgcatgaaatcgtttacacgtaaggagcatttggtcaaccatattcgccagcacactggtgaaactccattcaaatgtgaattctgtccgaaagcgttcacacgtaaagatcatctggtcaatcatgtgcgtcagcatactggtgaatcgccacacaaatgcatttactgcaccaaaacgtttacacgcaaagagcatttgacgaatcacacacgcaaacataccggcgactcgccccacaagtgcgagtactgcaacaaagtgtttacgcgcaaagaacatctcaacaatcacgttatgatccacacgggtatatcaccgcataaatgtgaattttgcgcgaaaacgtttacgcgcaaagagcatttgaccaatcatttgagacaccattccggcgataatccgcacgtgtgcaccgtctgcaataaaccatttacacgcaaagaacatcttatcaatcacatgagTCGATGTCATACCGGAGAACGACCGTACGCTTGCGAAGAGTGTGGCAAATCATTTCCGTTGAAGGGTAATTTGTTGTTCCATCAGCGCAGCCATAATAAGGGCATCAAGGCCCCGAGAAACTTTCAATGCGATCTATGTCCCAAGGATTTCATTTCGAAAGGTCATCTGGTCTCACATCGTCGTGCCCATTCTGGTGATCGTCCATTCGCGTGTGACCAATGTGGCAAATCTTTTATCGGCAAAGGTAACTGGTTGAGACACGCCAAGAAAGTACACCCGCATATAGTAAATCCACAATATGTGGCACAAAAAATCAAAGAAGTTCTTCCCATCCAGAGTATACcgacagccgtggttcaggattcgcttgtgccaacctcaacttccattacatccacaataacatcacaaagtggccatattctgcatcagccacatctgatgacatcacagcagcagccacagcaacagtcacaacaaacacaacagcaacagcagcttattctgcatcagccccatcaacagcatcaactccagttgcagcaacaagcactacatcaacaaccgaagcatccactacaaatgcacgatgaacaacaccaacaacagcagcaacagcaacaaaaacaacaacaacagcagcagcaacaacagcagcagcaacaacagcaacaacaacagcagcagcaacaacaacaacaacagcagcagcagcaacaacaacagcaacagcatcagcaacagcaacaacagcatcatcagcagcaacaacccatttctataattcatacatcagcatcagACTTTTTGTTACGTTTAGGTGCCTAA
Protein Sequence: MQTSEDSNVQQIITGQSLLPADSPQNALTRSGGSTSSAGRPIIVSSSGNRSSIALAASSSSTTHSTLSVRHPHSSQGQHLQQHLQQPHPHLQQSQNPQQNVTNHRKTATLQSNVLNQMNSQSVHHLGTDHMQQVHQVLDHALSGKMQIIKEEALANSTKLHLQHPQQLPPPPPIPHSHHHLLPPPPHLQHLSHHQQTPLLDVRGADGQILHVNIEDISQFLTYHEVFGKMPTDSALALGGAVTNPLVPTVSLANSLASASSSSITNAINNVIGQSQNAVLLSQQQQQQQQQQQQQQQQQPQPQQQQQQQQQQQQQQLQSPPSSSSSSSVSSIVTPKRETTPSNIIQQLESPSGSTTNPTDINGLPLVTATHACDICGKMFAFKYQLIVHRRYHNERKPFICQVCGQAFTTTIELSAHGKSHDGNNMFTCNVCYHVFANDASLERHMKRHSTDKPFACSICLKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMQNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCTVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCMKSFTRKEHLVNHIRQHTGETPFKCEFCPKAFTRKDHLVNHVRQHTGESPHKCIYCTKTFTRKEHLTNHTRKHTGDSPHKCEYCNKVFTRKEHLNNHVMIHTGISPHKCEFCAKTFTRKEHLTNHLRHHSGDNPHVCTVCNKPFTRKEHLINHMSRCHTGERPYACEECGKSFPLKGNLLFHQRSHNKGIKAPRNFQCDLCPKDFISKGHLVSHRRAHSGDRPFACDQCGKSFIGKGNWLRHAKKVHPHIVNPQYVAQKIKEVLPIQSIPTAVVQDSLVPTSTSITSTITSQSGHILHQPHLMTSQQQPQQQSQQTQQQQQLILHQPHQQHQLQLQQQALHQQPKHPLQMHDEQHQQQQQQQQKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQHHQQQQPISIIHTSASDFLLRLGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -