Basic Information

Insect: Gnoriste bilineata
Gene Symbol: -
Assembly: GCA_026546565.1
Location: JANSWN010094636.1:3563-8207[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 5.7e-05 0.0033 18.0 3.0 3 23 4 24 2 24 0.98

2 29 0.00085 0.048 14.3 2.8 1 23 33 56 33 56 0.96

3 29 2e-05 0.0012 19.4 0.4 1 23 62 84 62 84 0.98

4 29 4.5e-06 0.00026 21.5 0.2 1 23 93 115 93 115 0.99

5 29 0.0003 0.017 15.7 0.0 1 23 121 143 121 143 0.93

6 29 7.6e-05 0.0043 17.6 0.6 1 23 149 171 149 171 0.98

7 29 0.056 3.2 8.6 2.8 1 23 179 201 179 201 0.97

8 29 1.3e-05 0.00075 20.0 0.1 1 23 207 229 207 229 0.98

9 29 0.0046 0.26 12.0 1.8 3 23 235 255 234 255 0.98

10 29 2.4e-05 0.0014 19.2 0.3 3 23 264 284 262 284 0.97

11 29 1.7e-06 9.4e-05 22.8 1.8 1 23 290 312 290 312 0.99

12 29 0.00012 0.0069 17.0 0.1 1 23 318 340 318 340 0.98

13 29 2.6e-05 0.0015 19.1 3.4 1 23 345 368 345 368 0.98

14 29 0.0016 0.092 13.4 0.2 1 21 384 404 384 405 0.96

15 29 0.0011 0.065 13.9 3.3 1 23 412 435 412 435 0.97

16 29 5.7e-05 0.0032 18.0 3.8 1 23 441 463 441 463 0.98

17 29 0.0071 0.41 11.4 2.1 1 23 475 498 475 498 0.97

18 29 0.00023 0.013 16.1 2.4 1 23 504 526 504 526 0.97

19 29 0.00011 0.0064 17.1 1.4 1 23 535 557 535 557 0.99

20 29 0.021 1.2 9.9 0.7 1 23 563 585 563 585 0.97

21 29 0.00054 0.031 14.9 7.0 1 23 591 613 591 613 0.96

22 29 6.1e-06 0.00035 21.1 4.6 1 23 619 641 619 641 0.98

23 29 1.6e-05 0.00091 19.7 2.5 1 23 647 670 647 670 0.94

24 29 1.6e-05 0.00093 19.7 1.9 1 23 676 698 676 698 0.97

25 29 9.7e-06 0.00055 20.4 2.7 2 23 705 726 704 726 0.96

26 29 7.7e-05 0.0044 17.6 0.8 1 23 732 754 732 754 0.98

27 29 0.00015 0.0087 16.7 2.4 1 23 760 782 760 782 0.98

28 29 7.8e-06 0.00045 20.7 2.8 1 23 787 809 787 809 0.97

29 29 0.0014 0.078 13.7 0.1 1 23 815 838 815 838 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	5.7e-05	0.0033	18.0	3.0	3	23	4	24	2	24	0.98
2	29	0.00085	0.048	14.3	2.8	1	23	33	56	33	56	0.96
3	29	2e-05	0.0012	19.4	0.4	1	23	62	84	62	84	0.98
4	29	4.5e-06	0.00026	21.5	0.2	1	23	93	115	93	115	0.99
5	29	0.0003	0.017	15.7	0.0	1	23	121	143	121	143	0.93
6	29	7.6e-05	0.0043	17.6	0.6	1	23	149	171	149	171	0.98
7	29	0.056	3.2	8.6	2.8	1	23	179	201	179	201	0.97
8	29	1.3e-05	0.00075	20.0	0.1	1	23	207	229	207	229	0.98
9	29	0.0046	0.26	12.0	1.8	3	23	235	255	234	255	0.98
10	29	2.4e-05	0.0014	19.2	0.3	3	23	264	284	262	284	0.97
11	29	1.7e-06	9.4e-05	22.8	1.8	1	23	290	312	290	312	0.99
12	29	0.00012	0.0069	17.0	0.1	1	23	318	340	318	340	0.98
13	29	2.6e-05	0.0015	19.1	3.4	1	23	345	368	345	368	0.98
14	29	0.0016	0.092	13.4	0.2	1	21	384	404	384	405	0.96
15	29	0.0011	0.065	13.9	3.3	1	23	412	435	412	435	0.97
16	29	5.7e-05	0.0032	18.0	3.8	1	23	441	463	441	463	0.98
17	29	0.0071	0.41	11.4	2.1	1	23	475	498	475	498	0.97
18	29	0.00023	0.013	16.1	2.4	1	23	504	526	504	526	0.97
19	29	0.00011	0.0064	17.1	1.4	1	23	535	557	535	557	0.99
20	29	0.021	1.2	9.9	0.7	1	23	563	585	563	585	0.97
21	29	0.00054	0.031	14.9	7.0	1	23	591	613	591	613	0.96
22	29	6.1e-06	0.00035	21.1	4.6	1	23	619	641	619	641	0.98
23	29	1.6e-05	0.00091	19.7	2.5	1	23	647	670	647	670	0.94
24	29	1.6e-05	0.00093	19.7	1.9	1	23	676	698	676	698	0.97
25	29	9.7e-06	0.00055	20.4	2.7	2	23	705	726	704	726	0.96
26	29	7.7e-05	0.0044	17.6	0.8	1	23	732	754	732	754	0.98
27	29	0.00015	0.0087	16.7	2.4	1	23	760	782	760	782	0.98
28	29	7.8e-06	0.00045	20.7	2.8	1	23	787	809	787	809	0.97
29	29	0.0014	0.078	13.7	0.1	1	23	815	838	815	838	0.94

Sequence Information

Coding Sequence: ATGTATGGTTGTGATCTATGCAAGCGTACATATTCTCACAAACGTAATTTGGCTATGCACATGAAAACGCATTCGAATGCGGTGAAAGTACGCCGTCACAAGTGCGATAAATGCTCAAAAGCCTACAATCATTCCGCTTCGTTGGGTAAACATCAAATCAGCGTACATTCAGACGTGCGTGCCTTTAAAtgcgaaaattgtggcaaactctttgcgttaaaaggaaaactaaaaattcacatgcaaattcatttggagggtaacgcacggaaaccattccagtgccaaatttgtggcacaatgtacgccaataaatacgctcttggtattcacatgcgctcgcatacaggtgaaaaaccgttcgaatgcaacgagtgtggcaaatcgtatgtgaccgcaccggcgctagctatgcacaaagtattgcacaccggtgagaaaccgttcaagtgtaacatctgtggtgcggcatttgcacgacgcaacagcagacgcaggcatgtgctacggcatggtggcccattggtgaaacagcacaagtgtcacatgtgcccgaaagagttccttgaacgatggaaactaaacgatcatctggttacgcatagcaacgctaaaacattccagtgtgatatgtgcgaaaagggctttgcaacgccaaagttattgcagctacatcagctcatccatacgagacccgtagcgtgtgagaggtgcgacaaaaaattcagtacaacatcgataatgcgacagcatctcaagacccattcggaagaaccaaagaaaatgatatgtaacgtatgcgatttggctttttacaatgcatcgacactcgttaagcacaaacgaacgcacactggcgagaaaccatacgaatgcgatatttgtcaacggaaattcgctcgacaggatacgatgcggaaacatcagcgatcgcatacaggcgaaaagaattatcaatgcgaactgtgtgcaaaacgatttgcggccgcatacgctttggtgagacaCATGAAATGGCACGAAGGTGAACGTTTCGAATGCACCCTGTGCCCGAAATCGTTTTCACAGAAAAACGATTGTCGTCGACACATGCGATCGGCACACGGACACAATGCAGCTACCGCTGCATCGATCAATCTGAAACATCCGTACCAGTGTAACTACTGTAAGAATACGTTTGAGAACTGGTTGCTCCTGGACGCCCACATAAAGTCGGACTGTCTGGAGAAGCCGTACAAATGTTCCATATGCAGCGACAAAACGTTCACGAATCGTAAAAGTTGGCGTCATCACATGATGGCCCACAATGCTGAACTTGCGTATTGCTGTGATCTGTGTGGCCAAGCATTCAACCATAAGTACGGTGTCCGACGACACATGAAAGTGCATTTAGACAATCGTCAGCCGATAACCGAGCGCCGACatcaatgtaaactatgcacaaaggcgtatctacactcggcttcgttgagcaagcatataatggtcgcacactctagtactcggccatacaaatgcgaaatatgtcagaaatcatttgcgctgaagcaccgcctcaccaaccatgtgctcaaccataccaaaacggatgccgacaaaacgttccagtgcgactactgtgcaatgatgttccgcaaaaagcaaacgctcgtcgtccatttgcgtcggcataccggtgaaaaaccatactcatgtgatgtctgccagaaggcgttcgcctgtaacggtgacatgcgattgcatcgactcatccatactggcgaaaaaccgttcaagtgcatcacgtgcgacaaacgattccgcaagcgtgatcatctgaacaagcacatgcacatccattctggtgtaaaacaatttcactgtgatatgtgcccgaaacagttctcacaccgtcaaaatctcaacgaccacatgcgtatccatacgggcgaacgaccgcacatgtgtgacctatgcggaaaatcttttacacgtaaaggtgatctgtcgtcacatcacatcatcaatcacaccaacgatcggccatttgcgtgcgatgtatgcggtaaaacgtttcaccgtcgttacgcgctaacactgcacagccgaatgcatggtacccaaacgttttgttcgtgtaacgtatgcggccgcacgtttactttcactaaggcgctggccagccatatgcgtacccacaccggcgaaaagccattcgagtgtggcgtttgcaatcgaaaatttgcacgacgtgatacgatgcgattgcatcaagatacccattcgggcgacaagacccatcagtgcttgttgtgcgcgagaatgttttcgcgcttatcgggtatgcggcgtcacatgaaaatgcacgcgggcgaacgacatccatgcttgctttgctcaaaatcgtttgcccagaaaaatgatatgcgtcgccatatgcgaacgcatactggtgaacgtccgtatgtatgccaagtgtgtggtgaatcatttgccgaaactacagtgcttaacaatcaCATGACGGCCACTCATCCTATGGTAAACATCAATGGTTGA
Protein Sequence: MYGCDLCKRTYSHKRNLAMHMKTHSNAVKVRRHKCDKCSKAYNHSASLGKHQISVHSDVRAFKCENCGKLFALKGKLKIHMQIHLEGNARKPFQCQICGTMYANKYALGIHMRSHTGEKPFECNECGKSYVTAPALAMHKVLHTGEKPFKCNICGAAFARRNSRRRHVLRHGGPLVKQHKCHMCPKEFLERWKLNDHLVTHSNAKTFQCDMCEKGFATPKLLQLHQLIHTRPVACERCDKKFSTTSIMRQHLKTHSEEPKKMICNVCDLAFYNASTLVKHKRTHTGEKPYECDICQRKFARQDTMRKHQRSHTGEKNYQCELCAKRFAAAYALVRHMKWHEGERFECTLCPKSFSQKNDCRRHMRSAHGHNAATAASINLKHPYQCNYCKNTFENWLLLDAHIKSDCLEKPYKCSICSDKTFTNRKSWRHHMMAHNAELAYCCDLCGQAFNHKYGVRRHMKVHLDNRQPITERRHQCKLCTKAYLHSASLSKHIMVAHSSTRPYKCEICQKSFALKHRLTNHVLNHTKTDADKTFQCDYCAMMFRKKQTLVVHLRRHTGEKPYSCDVCQKAFACNGDMRLHRLIHTGEKPFKCITCDKRFRKRDHLNKHMHIHSGVKQFHCDMCPKQFSHRQNLNDHMRIHTGERPHMCDLCGKSFTRKGDLSSHHIINHTNDRPFACDVCGKTFHRRYALTLHSRMHGTQTFCSCNVCGRTFTFTKALASHMRTHTGEKPFECGVCNRKFARRDTMRLHQDTHSGDKTHQCLLCARMFSRLSGMRRHMKMHAGERHPCLLCSKSFAQKNDMRRHMRTHTGERPYVCQVCGESFAETTVLNNHMTATHPMVNING

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -