Gbil014792.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010021058.1:1-3772[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 1.9e-08 34.1 0.0 1 39 333 372 333 376 0.90 2 4 1.5e-13 1.8e-10 40.6 0.1 1 39 387 425 387 428 0.94 3 4 1.2e-18 1.5e-15 56.8 0.0 1 45 442 487 442 487 0.98 4 4 0.7 8.5e+02 -0.0 0.1 1 13 494 506 494 506 0.91
Sequence Information
- Coding Sequence
- AGTATTTTGCGAACAGCACAGCATTTGAAAATCAAGGGTTTGTCGGATGTATCACCGACAATGTCATCGCCATTTGCAGCTACTGAAACGCATCACGACACTAACATTCAAAGTTCGACTACGGTTCTAGCAACGAAACAAAGTCGCCTGAAACGCATGCGATCGTCTGATAATCCAGCTGAACAACAACCCGTTGAATCCATTGATTTAGAACAATCGTTGATTAACTACAGTTGCAGCACCGACGATGCCGAATTAAACGTTCCGAATTATTGCAATGACAATTTATCAGACATTCCAATTACTACGGTGAATGTGCTGCCACCAATATCGACAAAACCTCATCAACTTGACAAAAATAAATGCGTTGTTTTACTGGAAGAACAGCTACTATCATCCAGTCAGACAATCATAGATACTAATAGAAATGAGAACTTAATGGGTGTTTCGATGGGATTCCTTGATTTTGCACCGGAACCGCCAGCACCGACAGCCACTCCTGTCACCGAGCATGTGGATCTCAACTGTGCACCCAGCAGCGATACCAGAGATCTATCAAGTTCAACGCCAAACGGAGAGGTTCGAATCAAATTCGAAACATTGCGTCCATTGGATTCGGATACTCTGGAATTGGATGGGCACGTATCACAGCACTCTATACATAATATCGGTGAATATCAGCAAAATAGTCCGCCGAATACCCAAACTATTGTTACCGACGTGAATGGCTCGGTAAATAGTCGACCACAACAGAGCGGAACCATGGATATTGACACTAATAACGTCAAAAATGAACATCCATTGGTCATAACACCCGAAATCGTATCAATGATGACCTCTGGCCATATAGTCGAAATATACAATTCCGAATCGAGTGAAGACTCCAAAATGAATGCGTCTGGATCGCCCAGCGGACATAGTTCGCCGCAGTATACGAATTTGCTGGGCCCAAATGACGTTAAAAATGCAATCATGCCGGGTGGCCCGAAAACATGGACCCAAGAAGATATGGAATCGGCATTGGACGCATTGCGGACACATAACATGAGTTTGACCAAAGCGTCGGTGACTTATGGTATTCCATCGACAACATTATGGCAGCGTGCCCATCGGTTAGGCATTGATACGCCAAAAAAAGAAGGACCCACCAAATCTTGGAGCGAAGATTCGCTTAATAATGCTCTCGATGCTCTGCGAACGGGTCAAATATCAGCGAATAAAGCGTCCAAAGCGTACGGCATACCATCGTCGACACTTTACAAGATCGCTCGACGTGAAGGAATACGATTGGCTGCACCTTTTAATGCAGCGCCCACTACATGGACACCAGATGATCTAGAACGTGCTTTAGAGGCTATTCGCACTGGTCATACTTCCGTTCAGAAGGCTAGCACTGAATTCGGAATACCAACAGGAACACTATACGGTCGTTGCAAACGAGAAGGCATCGAATTGTCCCGATCGAATCCGACACCATGGTCTGAAGATGCTATGATGGATGCCTTAGAATCTGTTAGGTAA
- Protein Sequence
- SILRTAQHLKIKGLSDVSPTMSSPFAATETHHDTNIQSSTTVLATKQSRLKRMRSSDNPAEQQPVESIDLEQSLINYSCSTDDAELNVPNYCNDNLSDIPITTVNVLPPISTKPHQLDKNKCVVLLEEQLLSSSQTIIDTNRNENLMGVSMGFLDFAPEPPAPTATPVTEHVDLNCAPSSDTRDLSSSTPNGEVRIKFETLRPLDSDTLELDGHVSQHSIHNIGEYQQNSPPNTQTIVTDVNGSVNSRPQQSGTMDIDTNNVKNEHPLVITPEIVSMMTSGHIVEIYNSESSEDSKMNASGSPSGHSSPQYTNLLGPNDVKNAIMPGGPKTWTQEDMESALDALRTHNMSLTKASVTYGIPSTTLWQRAHRLGIDTPKKEGPTKSWSEDSLNNALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRTGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMDALESVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -