Gcor014045.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- -
- Assembly
- GCA_029298725.1
- Location
- CM055515.1:18846099-18848117[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.065 5.1 8.1 3.4 1 23 28 50 28 50 0.97 2 18 0.62 49 5.0 1.3 1 22 66 87 66 87 0.95 3 18 0.28 22 6.1 0.7 1 23 107 130 107 130 0.95 4 18 0.0015 0.12 13.2 1.5 1 23 139 162 139 162 0.96 5 18 0.0026 0.2 12.5 3.8 1 23 171 194 171 194 0.95 6 18 0.057 4.5 8.3 1.4 1 23 234 257 234 257 0.96 7 18 0.12 9.8 7.2 0.8 2 23 266 288 265 288 0.96 8 18 0.51 40 5.3 0.8 1 23 297 320 297 320 0.92 9 18 0.1 8.1 7.5 1.5 2 23 329 351 329 351 0.96 10 18 0.0092 0.73 10.8 0.5 2 23 360 381 359 381 0.96 11 18 0.0016 0.13 13.1 2.2 2 23 391 412 390 413 0.95 12 18 0.00025 0.02 15.7 0.9 1 23 453 476 453 476 0.97 13 18 0.075 5.9 7.9 2.7 1 23 485 508 485 508 0.96 14 18 0.073 5.8 7.9 0.7 2 23 517 539 516 539 0.95 15 18 0.45 36 5.5 3.7 2 23 549 571 548 571 0.93 16 18 4.7 3.7e+02 2.3 0.4 1 23 580 603 580 603 0.85 17 18 8.5 6.7e+02 1.4 3.9 1 23 611 634 611 634 0.83 18 18 0.058 4.6 8.3 4.0 2 23 644 666 643 666 0.94
Sequence Information
- Coding Sequence
- ATGTTTTCTCTGGATGTTGATCTGCGACAACAATGGTTGTCCCCAGGACTCTTCTCCTGTGAAGCCAAGCGACCAGAGCCCTACTTTTGCAAAGACTGCAACTTCACCACTGACTTTGTGGTCCAATTGAAGCACCACCTGAAAGACCACTCCACACGCACCGGAAATCCAAAAAGAAGCTATCGGACATTAATCTACAAATGTCGGAGCTGCGGTTTCGTCAGTTATTTCAGGTTGAAATTGTTGAGACACGTAAGGAAAGAATGCGCGCAGAAAAGGCGCCATGGGGGGCTTCCACAGTCAGAGACCCCCAAAACTTTTAACTGTGATTACTGCGAGTTTGCTACACCTCTCAACTACCGCCTGAAAGCCCACAAAATCAGAAGACATCTCCTCCCCCACGAAATCCGCtggtttgaatgtgatcaaTGCAATTTCAAGTCAAAAACCAAAGAGAGCTTGAAAGTTCACGTGATACGCAAACATACAAGCGACGCCGAAGCGAAATGGTTCCAATGTGATCAATGTCAGTACAAATCAAAGTTTAAGTCGCATTTAACAGCCCACAGGGTGCGAGTGCACGCGCGGGAAAACATCAAATGGGTTCATTGCGACCAATGCGATTTTAAGGCTCAGTACAATTACCACGTCGTCCAGCATAAAATCCGGAAGCATTTATCCCCGGAAGAGATCCACTGGTACGAATGTGACGAATGCGCCTATAAAACGAAACTAAAGAAAGAGTTGAAGTTGCACAAAATCCGGAAGCACCCCACTGAAGCCACGCAGTGGCTGCAATGTGATCAATGCGAATACAAAACGACGTACTCCAACGCGATGGCGTACCACAGAAAACGAGTCCACCCAACACTGTTTTTAACCCAGTGGTTCGAATGTGGGCAATGCGATTACAAAACGCACGGGAAGAACGAGTTGGCTCTTCACGAGTACCGAGCGCACGGGATTGATAACGTGGAGTGGGCGGAATGTGATCAGTGCTCCTACAGAGCCAGCACAAAGGGGCGGTTGAACCAACACAAAAACCGCACGCATTATCGCATTAAACTAAAGTCGCTCAAATGCGATATTTGCGAGTTTAAAACTACGATCAAGGCGAATTTAATGGCGCACAAACTGAGACATGTGGCACCGGAGAAGATAGAGTGGCAGCAATGCGAGGAGTGCGACTACAGAGCGAAGACTTTAAAGCAGTTGCAGGCGCATAAAATGCGCCACCACGCCACTGAAGATGTTAAGAAAATTCAATGTGATCAGTGCGAGTTCAAGGCTTTGTACAATTGTCATTTAGTCTCGCATAAAATAAGGAAACATTTAACACCGGATGAGATCGAGTGGTTCGTTTGCGAGTACTGCGGGTTCCGAACGAAAGGAAAAGACAAGTTGAAGATTCACATCCTGCGTCGACACACGGATGACTCGGAGGTGCAGTGGTACCAATGCGACCAATGCGAGTACAAGACGAAGATCAAGAAGTCGCTCTCCATGCATCGAAACAACAAACACTCCACTCAAGACCTGAAATTACTCCAATGCGACCAGTGCGAGTACAAAGCTCAGTACAACTCGTACCTAGCCAGGCATAAACTCAGAATGCACTCGTCTCCTGATGAGATTCAATGGTTGCAATGCGACAAGTGCAAGTATCGGGCGAAAACCAAAGTACTGATGAGACATCACGTGTTTCGCAAGCATATGGATGAGCCGGACATTGTTtggtttgaatgtgatcaaTGTAGCTACAAAGGTCGGACAATAAAAGAAGTCGAAGGACACAAAACGCGcattcattttacagaaaacatcaAATGGTTTCTGTGCGATCAATGCGATTATAAGACACAGTCAAAGTCTTACTTGGAGTGTCATAAAGTGAGGAAGCATTTGGCGCCGGATGAGATTGTCTGGCAAGAATGTGAACATTGCAGTTTCAGAACTAAGACGAAGAGAGACTTGAAGTTGCACGAATTGCGCAAACATGTGACTGATGACATTAAGTGA
- Protein Sequence
- MFSLDVDLRQQWLSPGLFSCEAKRPEPYFCKDCNFTTDFVVQLKHHLKDHSTRTGNPKRSYRTLIYKCRSCGFVSYFRLKLLRHVRKECAQKRRHGGLPQSETPKTFNCDYCEFATPLNYRLKAHKIRRHLLPHEIRWFECDQCNFKSKTKESLKVHVIRKHTSDAEAKWFQCDQCQYKSKFKSHLTAHRVRVHARENIKWVHCDQCDFKAQYNYHVVQHKIRKHLSPEEIHWYECDECAYKTKLKKELKLHKIRKHPTEATQWLQCDQCEYKTTYSNAMAYHRKRVHPTLFLTQWFECGQCDYKTHGKNELALHEYRAHGIDNVEWAECDQCSYRASTKGRLNQHKNRTHYRIKLKSLKCDICEFKTTIKANLMAHKLRHVAPEKIEWQQCEECDYRAKTLKQLQAHKMRHHATEDVKKIQCDQCEFKALYNCHLVSHKIRKHLTPDEIEWFVCEYCGFRTKGKDKLKIHILRRHTDDSEVQWYQCDQCEYKTKIKKSLSMHRNNKHSTQDLKLLQCDQCEYKAQYNSYLARHKLRMHSSPDEIQWLQCDKCKYRAKTKVLMRHHVFRKHMDEPDIVWFECDQCSYKGRTIKEVEGHKTRIHFTENIKWFLCDQCDYKTQSKSYLECHKVRKHLAPDEIVWQECEHCSFRTKTKRDLKLHELRKHVTDDIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415515;
- 90% Identity
- -
- 80% Identity
- -