Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: -
Assembly: GCA_029298725.1
Location: CM055512.1:5921384-5924577[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.012 0.97 10.4 1.7 1 23 86 108 86 108 0.99

2 18 0.0075 0.59 11.1 2.5 1 23 117 139 117 139 0.99

3 18 0.027 2.1 9.3 1.5 1 23 148 170 148 170 0.98

4 18 0.17 14 6.7 3.1 1 23 180 202 180 202 0.98

5 18 0.1 7.9 7.5 2.2 1 23 210 232 210 232 0.98

6 18 0.36 29 5.8 2.0 1 23 241 263 241 263 0.98

7 18 0.0029 0.23 12.4 2.2 1 23 304 326 304 326 0.98

8 18 0.14 11 7.0 0.1 1 23 332 354 332 354 0.93

9 18 0.33 26 5.9 1.8 1 23 363 385 363 385 0.97

10 18 0.0029 0.23 12.3 4.8 1 23 394 416 394 416 0.98

11 18 4.7 3.7e+02 2.3 4.3 1 23 425 447 425 447 0.97

12 18 0.44 35 5.5 2.5 1 23 456 478 456 478 0.98

13 18 0.78 62 4.7 0.7 1 23 487 509 487 509 0.95

14 18 9.6 7.6e+02 1.3 5.3 1 23 516 538 516 538 0.98

15 18 1.6 1.3e+02 3.7 0.9 1 23 547 569 547 569 0.90

16 18 0.0012 0.091 13.6 0.9 1 23 575 598 575 598 0.97

17 18 0.018 1.4 9.8 0.9 1 23 606 628 606 628 0.98

18 18 0.67 53 4.9 1.5 1 23 637 660 637 660 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.012	0.97	10.4	1.7	1	23	86	108	86	108	0.99
2	18	0.0075	0.59	11.1	2.5	1	23	117	139	117	139	0.99
3	18	0.027	2.1	9.3	1.5	1	23	148	170	148	170	0.98
4	18	0.17	14	6.7	3.1	1	23	180	202	180	202	0.98
5	18	0.1	7.9	7.5	2.2	1	23	210	232	210	232	0.98
6	18	0.36	29	5.8	2.0	1	23	241	263	241	263	0.98
7	18	0.0029	0.23	12.4	2.2	1	23	304	326	304	326	0.98
8	18	0.14	11	7.0	0.1	1	23	332	354	332	354	0.93
9	18	0.33	26	5.9	1.8	1	23	363	385	363	385	0.97
10	18	0.0029	0.23	12.3	4.8	1	23	394	416	394	416	0.98
11	18	4.7	3.7e+02	2.3	4.3	1	23	425	447	425	447	0.97
12	18	0.44	35	5.5	2.5	1	23	456	478	456	478	0.98
13	18	0.78	62	4.7	0.7	1	23	487	509	487	509	0.95
14	18	9.6	7.6e+02	1.3	5.3	1	23	516	538	516	538	0.98
15	18	1.6	1.3e+02	3.7	0.9	1	23	547	569	547	569	0.90
16	18	0.0012	0.091	13.6	0.9	1	23	575	598	575	598	0.97
17	18	0.018	1.4	9.8	0.9	1	23	606	628	606	628	0.98
18	18	0.67	53	4.9	1.5	1	23	637	660	637	660	0.95

Sequence Information

Coding Sequence: atgagtaaagaaaatgtagaaaatttcgATTATAATAATGTTTACGTGAAGACAGAGCAACTGAGTGATGTTGAGATCGAatatgaagaagaagaagtggATTGTGATATTGTCAAACTTGAAATCAAAACTGAGATTGAAGAAAGCTCAAATAATCTTTTTGACAGGTGTTCGCCGCCCCCCGCCCCCCAAGAGACTGACTCCCCCTTGCTACCCGTCAAGGAAGAACCAATCAGTGAAGACCCGAACAAAAGCTTCCGTTGCACAGTCTGCCCCTTTCGCACAAAATGGAAAAACAGTCTTCGTGGCCACATGAAAACGCACAGTTCCCCGGAATTCGTCAAACTCTACAAGTGCAAGAACTGCTCGTACAAAACCAAGTGGAAGAACTACTTGGCGAAACATATCCGCATTCACAGCACTCCCGAGTGTCTGGATATGTACAAGTGCACGATCTGCGAGTTTCAGACAAAGTGGAAGACGAGTCTGAAGATGCACATGTCGATACATACAGTCAGGGATACGAAGTTGAAGATCTATAAGTGCACAAAGTGCTCGTTTGAGTCGAATTGGAAGCAGTACTTAAACAGGCATTTGAAGAGTCATCTTCCGGAGAGTCTGCAGAAGCACAAGTGTCCGGATTGTGCCTTCCAGACGAAGTGGAAGCAGTACTTGAAGGAGCACATGAAGATACATTCGGCGCCGCATACAGTGAAGACGTATAAGTGCGCCGAGTGTCAGTTTGTCACTCGGTGGAAGCAGTACTTCAAAGAGCACGTAAAACGACACAGCAATCCGAAGAGAAACCGCGTATGGAAATGCTCGGCGTGTATCTTCGAAGCTGAGTCGAAGTTCCTCCTGGCTCAACATCTGAAGAAGGTCCATGATATCATCGATAAAATCGAATACTTCCAATGCTCAGAGTGCGGTTTTAAGACGCGCTGGAAGCAGTACTTGAAGCGCCACATCAAACTTCACGATGAGAATGCCAGTTATAAGTGTCCGGAGTGTCCTTTTGAGACCAAGTGGAAGAATAGTCTCATCGGCCACCAAGTCATCCACAGCGAGTCGAAACTAGTTTCGTTGTACCATTGCAACATTTGTACGTTCAAGACCAAATGGAAGAACAGTCTTAATGGGCACATGGCAATCCACAATCCTCCAGAGAACGTCAAAATGCACAAATGTACAGAGTGCTCTTTTGAATCTCGAAGCAAAACGTACCTCAAGCGCCACATCAAACTCCATGGAGCCGCCGAAGAAGTGGAGACTTTCACATGTAATCAGTGCCAATTCCAAACCAAATGGAAGCAGTATTTCAAAGAACACGTGAAGAAACACGTGTCGCCGGAGCAGATCCCCGTTTACAAATGCCAAGAGTGCGAGTTTGTCACCAAGTGGAGGCAGTACTTCAAAGAGCACGTTAAAAAACACCAATCGCCAGAACTCCTGAAGCAGTACGCGTGCGACGACTGCGAGTTCACCACCACGTGGAGGCAGAGCTACCGCGAGCACGTGAAACAACACGACGTTCCGGATAAAGTCTACAAATGCACGAGTTGCAAGTTCAAGACTAAATGGAAGCAGTACTTCCGGGAGCACGTCAAGAAACACACCAATCCGGACCTGGTGAAGATGTACCAATGCACGATTTGCTCTTTTATCACGATATGGAAGCAGTACTTCAAGGAGCACGTGGAGAGACACAACTCGAGTCAGATTTACAAATGTGCCAAATGTGATTTTGAAGGAGAGTCGAGGTACTACTTGACGAAGCACATGAAAGAAGTGCATTGTCAGGTGGAAAAGAAGGCCTTTAAGTGTGAGAGGTGTGGGTTTACCACGATGTGGAAGGAGAGTTTGAAACTGCATCTGAGGATTCACGTTAGCGCGAAGAACGCCAAGTTGTACAAATGTTCAGTTTGTATGTTTGATACGAGGTGGAAGAGCAGTTTTAACTCGCACATGAAGATGGTGCACAGTAAACCGGAAGTTGTGAAGAAGTATAACACGAGGCGCAGTAAAGGAGAGGACGACGAGGAGAAGGAGGAGGAAGACGAAACTGAGTGCAAGTAG
Protein Sequence: MSKENVENFDYNNVYVKTEQLSDVEIEYEEEEVDCDIVKLEIKTEIEESSNNLFDRCSPPPAPQETDSPLLPVKEEPISEDPNKSFRCTVCPFRTKWKNSLRGHMKTHSSPEFVKLYKCKNCSYKTKWKNYLAKHIRIHSTPECLDMYKCTICEFQTKWKTSLKMHMSIHTVRDTKLKIYKCTKCSFESNWKQYLNRHLKSHLPESLQKHKCPDCAFQTKWKQYLKEHMKIHSAPHTVKTYKCAECQFVTRWKQYFKEHVKRHSNPKRNRVWKCSACIFEAESKFLLAQHLKKVHDIIDKIEYFQCSECGFKTRWKQYLKRHIKLHDENASYKCPECPFETKWKNSLIGHQVIHSESKLVSLYHCNICTFKTKWKNSLNGHMAIHNPPENVKMHKCTECSFESRSKTYLKRHIKLHGAAEEVETFTCNQCQFQTKWKQYFKEHVKKHVSPEQIPVYKCQECEFVTKWRQYFKEHVKKHQSPELLKQYACDDCEFTTTWRQSYREHVKQHDVPDKVYKCTSCKFKTKWKQYFREHVKKHTNPDLVKMYQCTICSFITIWKQYFKEHVERHNSSQIYKCAKCDFEGESRYYLTKHMKEVHCQVEKKAFKCERCGFTTMWKESLKLHLRIHVSAKNAKLYKCSVCMFDTRWKSSFNSHMKMVHSKPEVVKKYNTRRSKGEDDEEKEEEDETECK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00415540;
90% Identity: iTF_00415540;
80% Identity: -