Gcor014022.2
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- -
- Assembly
- GCA_029298725.1
- Location
- CM055515.1:18701895-18704594[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.9 2.3e+02 2.9 8.1 3 23 37 57 35 57 0.95 2 23 7.6 6e+02 1.6 3.1 1 21 70 90 70 91 0.91 3 23 0.0057 0.45 11.4 1.5 1 23 134 157 134 157 0.96 4 23 0.0067 0.53 11.2 1.6 1 23 166 189 166 189 0.97 5 23 0.0049 0.39 11.6 1.2 1 23 229 252 229 252 0.96 6 23 0.25 20 6.3 1.8 2 23 261 283 261 283 0.96 7 23 0.92 73 4.5 0.4 1 23 287 310 287 310 0.90 8 23 0.011 0.86 10.5 3.2 1 23 338 361 338 361 0.96 9 23 0.044 3.5 8.6 2.2 2 23 371 393 370 393 0.95 10 23 0.0034 0.27 12.1 3.5 1 23 402 425 402 425 0.95 11 23 0.0064 0.5 11.3 1.5 1 23 465 488 465 488 0.95 12 23 0.018 1.5 9.8 2.8 2 23 497 519 496 519 0.96 13 23 0.0096 0.76 10.7 0.5 2 23 560 582 560 582 0.96 14 23 0.0043 0.34 11.8 0.8 1 23 590 612 590 612 0.98 15 23 0.11 8.8 7.4 1.3 2 23 622 644 621 644 0.96 16 23 0.038 3 8.8 1.6 2 23 653 675 652 675 0.95 17 23 0.1 8.1 7.5 5.3 2 23 685 707 684 707 0.95 18 23 1 80 4.3 3.8 1 23 716 739 716 739 0.93 19 23 0.14 11 7.0 1.0 2 23 748 770 747 770 0.93 20 23 0.0055 0.43 11.5 1.0 2 23 780 802 779 802 0.95 21 23 0.65 52 4.9 0.9 1 23 811 834 811 834 0.95 22 23 0.026 2.1 9.3 0.7 2 23 843 865 842 865 0.96 23 23 0.01 0.81 10.6 1.3 2 23 871 893 871 893 0.97
Sequence Information
- Coding Sequence
- ATGTTGGAAAGTCTCCTTATTGGACCCTCAAAAAATGAGGTCGCAGCCCCCATGGACATGTCTCCACGACTCTtctcttgcgaattcaagccactgGAGCCCCACTTGTGCAAACACTGCAACTTCACCACTAACTTCACCGTCCATTTGAAGGAGCACGTTAAAAATCACTGCTTGAACACTGAAGGAGAGTTGAGTAGATCAGGTTATAGATGTGAAAAGTGCAGTTTTCACACTTTCTTCAAGTTAAAACTCCTGAGACATGTTATGAAGGAATGTAACAAGAAAGGGGGCTCTAAAGTGCTCATCTGTGATTCCTGCGACTACACCACGCATCTAAACTATCGCATGAGAATTCACCAAATCCGGAGACATTTACCAGCACATGAAATTCGCtggtttgaatgtgatcaaTGCAACTtcaagtcaaaaaacaaaactGGTCTAAAAGTCCACGTTTTACGCAAACATACAAGCGACGCGGAAATTAAATGGTATAAATGTGATCACTGCTCATACAAAGCAAAGTTGAAGTCGCCTTTAAGAGCCCACATCCTTCGGATGCACGTGCGTGAAAATATAAAATGGGTTCATTGCGATCAATGCGAATTCAAGGCTCAGTTTAACTACCTGATCACCCAGCATAAAATCCGCAAGCATTTATCTAATGAAGAGGTTGAGTGGTACGAATGTGACGAATGCGactacaaaacaaaaataaagaaagagttgaaaatccacaaaatccgAAAACATCCCAACGAGAACATGCAGTGGCGCCAATGTGATAAGTGCGATTTTAAGACGACGTACTCGACGTCGATGGCGTACCACAAGAAACGAGCGCATCCAGAATTGTTTTTTTGTGGACACTGCGACTATAAAGCGAACGGGAAGATGGATTTGGCGCTCCACGAGCAAGAAGTACATGGGATTGACAACGTGGAATTTCTTCAAAGAAGGCGTCACATGCCCAAGTTGGGGGCCCCCAAGTCTGAACCTTATAAAACTTTCACATGTGATCTCTGCAGCTACACTACGAATTACAACTACCAGTTGAAAACCCACAAAATCAAGAGACACTTGTCCCCGGAGGAAATCCGCTGGATTCAATGTGACCAATGCGAGTTCAAGTCTAAAATGAAAGAACACTTGAAAGCTCACGTACTGCGCAAGCATACAAGTGACGCCGAAGCGAAATGGTTCCAATGTGATCAATGCCCGTACAAATCAAAGTTTAACTCGCATCTAACAGCACATCGGGTTCGGAAACATGCGCGCGAAGATataaaatgggtttattgtgaCCAATGCGATTTTAAGGCTCAGTACAATTACCACGTCGTCCAGCATAAAATCCGGAAGCATTTATCCCCGGAAGAGATCCAGTGGTACGACTGTGACGAATGCGGCTATAAGACCAAACTAAAAAAAGAGTTGAAGCTGCACAAAATCCGGAAGCACCCAAACGAAACCATGCAGTGGCTACAATGTGATCATTGCGACTATAAATCGACGTACGTCAGCGCACTGAAGTACCACAAAAAACGAATGCATGCAGAGTTCTATTTGTCGCAGTGGTTTATATGTGGGCAATGCGACTATAAAACGCTcgttaaaaacgaatttttacTACACCAGTACCGAATCCACGGGATTGATAACGTGGATTGGGCGGAATGTGATCAGTGTCCCTACAGAGCGAGCACGAAAGGGAAGTTGAACCAACACAAAAATCGCGCACATTACGGAATTAGGATAAAATCATTTAAATGCGATATTTGTGAGTTCAAAACTGCGACCAGAGCGAGTTTAGTCACGCATAAACTAAAGCATGTAGCTCCGGAGGAGATCGAGTGGCAGCAATGCGAGGAGTGCAGCTACAAAGCGAAGACTCTTAACAAGTTGCAAGAGCACAAAATGCGCAATCATGCCCCTGAAGAGCTTAAAAGGATCCAATGTGATCAGTGCGACTTTAAAGCAGTGTACAACTCTCACTTAATCACACATAAATTACGGAAACATTTAAATTACGATGAGATTGAATGGTGTGTTTGCGAGTTCTGCGGATTTAAAACCAAAGAGAAACACAAACTCAAAGTTCACATCTTGCGCCGACACACTGATGATGCCGAAGTTCAGTGGCACCAATGTGACCAGTGCGAGTACAAAACGAAGATCAAAAAGTCGTTGTCCACTCATAAAATCAACAGGCACTCTAATCAAGATCTTAAGTTACTCAAATGCGAGCATTGTAACTACAGAGCTCAGTACAATTCTGCTTTAGTCCAGCACAGCCTTCGAGTCCACGTTTCTGATGATGAGATTCAGTGGTTGCAATGTGAAAAGTGCCCTTATCGGGCGAAATCGAAAGTCCTGTTGAAAAACCACATCTTCCGCAAACATATGAACGAGCCTGATATAGTTTGGTTTGACTGTGATCAGTGCAGCTATAAGGGACGCACGAAAAGAGAAGTACAGGGACACAAAAATCGGGTTCATTTCATAGAGAACATCAAGTGGCTATATTGTGATTATTGTGATTATAAAGCGCAATTGAAATCTGCGTTGGAGTCTCACACAAGACGGAAGCATGAGATTAAATGGGAACAGTGCGAGATTTGTGGGTTCAAGACCAAGACACTGAAAGACGTCAAGTTGCATCAAATGCGGAGACACTTTAAAGAGGAAACCAAGTAG
- Protein Sequence
- MLESLLIGPSKNEVAAPMDMSPRLFSCEFKPLEPHLCKHCNFTTNFTVHLKEHVKNHCLNTEGELSRSGYRCEKCSFHTFFKLKLLRHVMKECNKKGGSKVLICDSCDYTTHLNYRMRIHQIRRHLPAHEIRWFECDQCNFKSKNKTGLKVHVLRKHTSDAEIKWYKCDHCSYKAKLKSPLRAHILRMHVRENIKWVHCDQCEFKAQFNYLITQHKIRKHLSNEEVEWYECDECDYKTKIKKELKIHKIRKHPNENMQWRQCDKCDFKTTYSTSMAYHKKRAHPELFFCGHCDYKANGKMDLALHEQEVHGIDNVEFLQRRRHMPKLGAPKSEPYKTFTCDLCSYTTNYNYQLKTHKIKRHLSPEEIRWIQCDQCEFKSKMKEHLKAHVLRKHTSDAEAKWFQCDQCPYKSKFNSHLTAHRVRKHAREDIKWVYCDQCDFKAQYNYHVVQHKIRKHLSPEEIQWYDCDECGYKTKLKKELKLHKIRKHPNETMQWLQCDHCDYKSTYVSALKYHKKRMHAEFYLSQWFICGQCDYKTLVKNEFLLHQYRIHGIDNVDWAECDQCPYRASTKGKLNQHKNRAHYGIRIKSFKCDICEFKTATRASLVTHKLKHVAPEEIEWQQCEECSYKAKTLNKLQEHKMRNHAPEELKRIQCDQCDFKAVYNSHLITHKLRKHLNYDEIEWCVCEFCGFKTKEKHKLKVHILRRHTDDAEVQWHQCDQCEYKTKIKKSLSTHKINRHSNQDLKLLKCEHCNYRAQYNSALVQHSLRVHVSDDEIQWLQCEKCPYRAKSKVLLKNHIFRKHMNEPDIVWFDCDQCSYKGRTKREVQGHKNRVHFIENIKWLYCDYCDYKAQLKSALESHTRRKHEIKWEQCEICGFKTKTLKDVKLHQMRRHFKEETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -