Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: -
Assembly: GCA_029298725.1
Location: CM055518.1:6214682-6217756[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0011 0.089 13.6 0.1 2 23 85 107 84 107 0.94

2 11 0.011 0.89 10.5 4.6 2 23 194 216 194 216 0.91

3 11 6.3 5e+02 1.8 7.6 3 23 379 400 378 400 0.95

4 11 0.0083 0.66 10.9 0.1 2 22 452 472 451 474 0.87

5 11 0.00047 0.037 14.8 1.8 2 23 534 556 533 556 0.96

6 11 0.11 8.7 7.4 0.2 2 23 581 603 580 603 0.93

7 11 0.0086 0.68 10.9 3.7 2 23 649 671 648 671 0.96

8 11 0.12 9.5 7.3 3.7 3 23 686 707 684 707 0.92

9 11 0.00027 0.021 15.6 0.6 2 23 759 781 759 781 0.95

10 11 0.072 5.7 7.9 0.1 1 23 851 873 851 873 0.98

11 11 0.0031 0.24 12.3 0.6 2 23 883 905 882 905 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0011	0.089	13.6	0.1	2	23	85	107	84	107	0.94
2	11	0.011	0.89	10.5	4.6	2	23	194	216	194	216	0.91
3	11	6.3	5e+02	1.8	7.6	3	23	379	400	378	400	0.95
4	11	0.0083	0.66	10.9	0.1	2	22	452	472	451	474	0.87
5	11	0.00047	0.037	14.8	1.8	2	23	534	556	533	556	0.96
6	11	0.11	8.7	7.4	0.2	2	23	581	603	580	603	0.93
7	11	0.0086	0.68	10.9	3.7	2	23	649	671	648	671	0.96
8	11	0.12	9.5	7.3	3.7	3	23	686	707	684	707	0.92
9	11	0.00027	0.021	15.6	0.6	2	23	759	781	759	781	0.95
10	11	0.072	5.7	7.9	0.1	1	23	851	873	851	873	0.98
11	11	0.0031	0.24	12.3	0.6	2	23	883	905	882	905	0.91

Sequence Information

Coding Sequence: ATGATGACATCCGTCACGTTACCCTCAACTTCTGGTCCCTTACATGGAGGATACTCCTCAGTAGCCGAGGAAACAACAAGCAGCGAGCCCGAGTTCGAAACACCTCGTCCAGTGAAACGTTGTCTAGTAACACCATTATCCGATTCATGCAAAAAGCGGAGAAAACAATCGACCCCAGTCCGAATTTCAGCAGCCGAATCCGACATTCATACCGAAGGTAAGCCAAGTTCGACCTCCCCCGAGCCAGAACTGCAGTGTCCCGTGTGCCAATTATTCTTCAACAACCCTGAGCAAGTTCAGAATCATATAGTATCGGATCATTCCGCGGTTGAATGCAAGAAAGAACCGGAAGATTTTGCACTGAATCCGTCATCGGAACGAGTCGAGACGCCTCTAGAGTTGACTTCGAACAGGCCGGAGGTACCATGGATGAACGAGCTGCAAGGCAAAGAATGGATGAATCCAAGTTTGCACGGCTTGCCTTTCAACCCAGCAAATCCGATGTTTATGACTTTACCTCAGTTTGCACAACCTGATAATTTGCCGAGACAGCCTATAAGAATCTTCAATCCGGATGCGTATTGTGACTTGTGCAACAaagaattttgtaacaaatattttttgaaGACTCATAAAGCTAACAAACACGGCATCTATTCGGATCCTCCCTCATCAGAGCCTTTAGTGAATAATCCAAATATTGCTTCTTATGCTGGAACGATTAAACTCCCAACTTCCGTGCCAAGTGTAGAAATATCAACTGTTAAAACTGAAAAACCAGCCAATATCATCAACCCATTCAATAACATATTCCCAACTCCGTTCTCAAACAAATCCTTCCCGCAAAAAGCAAACAAACCGAATCTCCCGAATTTATATGAAAGTGAATCGAATGAAAATGTTCCTAATTCAAATGGTTTCTCATCAAACAGTGAAAGTGATAAAGTTACACCAGATGACCAACCAACTGAAGAATCTTCTAGTCCTAGAAACGTACAAACCGAATCTACCTCATTTAAAAACGATTCCGAAGGCGGAATCTACTTTATCCCACAAAGTAAAATGTCTCCAGGTAATGATCTCGAAATATCCAATCGCCTAAGAAGAATCGGTGTTATGAATCCTAAAGCATTTTGTGAGATTTGCTGTAAAGAATATTGCAACAAGTACTTCTTAAGAACCCACAAGATGAAACGCCATGGCATTTACATTCCAGATGACAAAGATAAAGACATTAAATCCGACGGTGGTAGTTCTTTTCCTTGGCAAAACAATATGCAAACTAGTCCCTTAAATCTGATAATGACTGAACAATCAAATACCGACCGTAAAACCACCTCACCCTCAGACATCAGCTGCGATATATGCGGAATCAAGTTCCAAAATGCGAGCCTGTTTCAGCTGCACAATGTCAGCGTTCACTCGAAACTGTATTCCAAAGAAGAAGAACAACACCAAGAACAAACAAATGAAGAATCGAAAAAAGATAACCCTGCGGCAGATAAATCGCTGAACGCCGAAGCAATCAGCGAAGATCTACAAAAACTTCAAACAATGATTTTGCAATTAAATGAACTCGATGTTAGTAAAGTCTGTACAACTTGCAATGCTTGTAACAAGGAGTTTGAAAATCGTTATTTTTTACACGCCCACATGATGACAGAACATGGAATTTTACTTGACGATGTTGCAGACGTTGATAAACCTGTTGAATCGGAAAACAGTTCAAACAACAACACTATGTGCGATTTGTGTGGCAAAGATGTTCAAAATGTAGACGAGATGAAAAAGCATTTACTGGAATTCCATCCTAATCACCAAGGGAACTTAGATACCATCAAGGAAGAGTTCAATGGTTTTAGTACTCCTGAAAAGACCGTTAACAGGATACCGGTGTCCAGTGCAGAACGTCGAATTAGCATGAACGTGACTCCGACTAGCAGTTATTGCGACATTTGCAATAAGGAACTGTGTAATAAATATTTCATGAAGACGCATATGCAAAGAATGCACGGGATAGAGATCGAGAATGGCGCACAGATCGGTGGTGTCATCTGCGACATATGCAATAAAGAATTGTgcagtaaatattttttaagagtTCACAAGCACAATACTCACGGAATTGTCGAATACGGTACAAGCCTTCTGCAACCGCGTAAAAACGAAGGCGAACCAACCACAACACCTCATATAACCGCAGAACCAGATCCAGCGTTGAAACCTGCCGATTTGGCCGATTTGAGTCATCGCTATTTTACCCACTTCACCGAAGTTTGCTCTATTTGCAGTCGGCGTTTTCGCAGTACAAAATGGTTGAAAGCGCATTTATTAAGCGACCACGGTCAAGCTGGTGCCGAAAAATGGGCCGAATTAGAACAACAACTTCAACAGAGCATCGGCCAACATTCTAAAGCTGTGACTGGAATTAAAAGTGAACGCGGTAGTCCCACATTGAAAATACCGAACGGTGgtcaagaaagaaaagaagTCGGGATCCAGAATGTACTGTCAAGTTTGTTTGGCGTTGACGAATCAAGTACAAAAAGTTATCCATGTTCCTATTGCCCTTTTACGACTCCTCTCCTTCCGTTGCTGTTCGTACATGAAAGATCTCATTCGATGTCGACGGACGGTGCACCATTGAAATGTCCAGTGTGCACTCAAAGCTTCCTGCAGCCAGAACTGTTGCAGCATCACATGTTTGCTCAACATCCGTTTCTTCCCTTGCCACCGTTTTTTAATGGGAACGAAAATCCTGGCGAGACGTCCAAGGAGCCGTCCGAAAACGCAGACGAAGACGAAGGAAGCAAGAccaagaagaaaggaaaggGGAAAAGAGTCGAACTGTCGCCAGAAGTCGGACAGAGTTTGAAAGACGTGGCGAAAAGGGCGCAAGTTCCTGCTGCATATGCGTTGCCTCAAGGGGGCGAGGATACGGGGTATGTGATGCAGGCGTTTTTGGTCGAGGAGGCTGCCGCGGAAAAAAGAATTGTGCCGGCCGTGGTGTTCTTGCCGGTATTCCAGAAGCAGCCCGCACCTCTCACCGTTACATTCACTCTCACCCCGGCCTAA
Protein Sequence: MMTSVTLPSTSGPLHGGYSSVAEETTSSEPEFETPRPVKRCLVTPLSDSCKKRRKQSTPVRISAAESDIHTEGKPSSTSPEPELQCPVCQLFFNNPEQVQNHIVSDHSAVECKKEPEDFALNPSSERVETPLELTSNRPEVPWMNELQGKEWMNPSLHGLPFNPANPMFMTLPQFAQPDNLPRQPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYSDPPSSEPLVNNPNIASYAGTIKLPTSVPSVEISTVKTEKPANIINPFNNIFPTPFSNKSFPQKANKPNLPNLYESESNENVPNSNGFSSNSESDKVTPDDQPTEESSSPRNVQTESTSFKNDSEGGIYFIPQSKMSPGNDLEISNRLRRIGVMNPKAFCEICCKEYCNKYFLRTHKMKRHGIYIPDDKDKDIKSDGGSSFPWQNNMQTSPLNLIMTEQSNTDRKTTSPSDISCDICGIKFQNASLFQLHNVSVHSKLYSKEEEQHQEQTNEESKKDNPAADKSLNAEAISEDLQKLQTMILQLNELDVSKVCTTCNACNKEFENRYFLHAHMMTEHGILLDDVADVDKPVESENSSNNNTMCDLCGKDVQNVDEMKKHLLEFHPNHQGNLDTIKEEFNGFSTPEKTVNRIPVSSAERRISMNVTPTSSYCDICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKHNTHGIVEYGTSLLQPRKNEGEPTTTPHITAEPDPALKPADLADLSHRYFTHFTEVCSICSRRFRSTKWLKAHLLSDHGQAGAEKWAELEQQLQQSIGQHSKAVTGIKSERGSPTLKIPNGGQERKEVGIQNVLSSLFGVDESSTKSYPCSYCPFTTPLLPLLFVHERSHSMSTDGAPLKCPVCTQSFLQPELLQHHMFAQHPFLPLPPFFNGNENPGETSKEPSENADEDEGSKTKKKGKGKRVELSPEVGQSLKDVAKRAQVPAAYALPQGGEDTGYVMQAFLVEEAAAEKRIVPAVVFLPVFQKQPAPLTVTFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00167920;
90% Identity: iTF_00167920;
80% Identity: -